RNA id: XM_039792313.1


Basic Information

Item Value
RNA id XM_039792313.1
length 3164
RNA type mRNA
GC content 0.48
exon number 13
gene id pkp2
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14276852 ~ 14290030 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCGCCCACCGCACACAACAAAGCAGGAACAGTAGCTACCCATCGAGTTAAATGAAGGGACCGACCTAGACTCTCGGCAGATTTGGATTTGTCCACAATGGAAGAggtgttttttaaatcaacGTTACCTGCGCAGGACTCGTTCGTGCTGCATGACACCAGTCTGGCTCTGCCGGCCGAGCCGACTCTAAGATCCCCCATGGGAGTGAATTCAAACGGCCGGAGTCTGCGTGTTAACCAGCAGGTTCAGCTCACACTGGCACGCAAGGGAAGAAAGGCTGTGTCCAATGGTAGTGTCCAATTACAGAAAAACACTGCAAAAAACTTTGATGCTACAGATGGACTTTTACCAAACATGAAGgtAAAAGGATCGGGCCTCACCAACCGCTCTCTCTCAAGTAACCATGTGCTGAGACCATTGAGGAGGGTGGAAGTGTCTCCAGCACAGAGCCCAGAGTTACCTCGCAGCCGCTTCAATTATAGTACCCACCGTCATGGGACCTACACCCACCCAGGGCCCAGTCAGTCACACAGGGGGGGGACCCTTCTGGACCACTCACTTGGTTCTGATTCATTTCGTCGCTATGCTTTTTCCGAGGCACCCCGTGTCACACGGTCGCTCGCATCCACATCTGCAGACAGGACCTTCCACCGGAGGTcactcagacagacagcagcACCACAGCCTGTGTTTGCAAATGCAGCGTTTCAGCCAAGTGGTGAATATGGCTCTTGCTGGGATCATAACCAAACTATTGTCAAACAGGATAAAAACACCTTGTCCTGGTTGGCTGGGCTCAGGAGGGATTGTCAGGGGCACCACAGACAGAATTCATACCCACCCTCGGTCACTAGCGTGGAGGTGGACATGGGGCGGCAGACGGAAGTAGAACTCCCCATTCAGCAGATCCATGCAGAGAATATCCTAACAATGAAGTCAGAGAACAAGCCCCCAGAGATGACGTTAGAGAGGGCCGTGAACCTGTTGACCCAGGATAATGAGGAAATGCTCATCTGTGCAGCCAGCCACATACAGAATCAATGTTTCAAGAGTGACGATGCTAAAAAGATGGTGTACTATCTCCGTGGGATTGGAAAGCTCCTGCACCTCCTGTGCAATGACAATGAGGAAGTGCAACATGCTGCCGCTGGGGCTCTACGTAATGTCGTTTACCAGAGCACCGAAAACAAGATGGAGGTAAAGGAAAATGATGGCCTCGCCACTATTTTGCGTGCGCTGAAGAGCAGCCGTGATGTGGAGACCAGACGACAACTTACTGGTCTTTTGTGGAATCTCTCCTCTCATGACCTTTTGAAGGAGCATCTATCCAAAGAAGTCTTATCAGTCCTCACCAAGTCTGTCCTGGTACCAAGTTCTGGCCTTTCTGAAGGCGAGAACCCAAAAGACGAGCTCCTAGCTGATGCTGATGCTTTCCACAGTGCTACCGGCTGCCTGCGAAATCTGAGCTCCGCTGGTCCTGATGGAAGGAAAGCAATGAGGGAGTGTGAGAATTTTATTGACTCTCTGGTCTACTACATCCGGGGAGCCGTAGCTGACAAGACAGATGACAAGTCCACAGAGAACTGTGTCTGCATCCTGCACAACCTGTCTTATCAGATAGAGGCAGAGCTTCCTAAGAGGTACACCTTAGATCTCCGAGAATCTCGACAACACTTGGCTTCTAAGCAAAAGGCTGTCGGCTGCTTTAATTATCGCAGTACCAAGATCACTGAGcatCTGGAGCGACAGTGCCCCCTGCTGGAGGAGAAGGCTAACCCCCATGGCATGGAGTGGTTGTGGAGCACCATCACTATCCGCATGTATCTGTCACTGATGGCCCGCAGTGTGCGTCAACAAACCCAGGAGGCTGCCATCGGAGCCCTGCAGAACATCACAGCTGGGAAAGGAGCGCAGGTGTCTGAAGCCATCGCCTTCACTATTGTTCAACGGGAAAATGGCCTTCAGCATGTCAAAAAGATGTtggaggagggagaaagtaATGTGAAGAGGACGGCCATATCTCTAATAGAAAACCTCTCGCGCTACCAGAAACTGCACCCTGACATTGTGAAGCAGGGGATGCCAGAGTTGGTGGGGATGCTACCCAACGACGACACCGGCACCGAACAGCCCACCGAGGTGACGGCTTCTCTGTGTCACACCCTGAGCAACCTGTGTCAGAGTGACAGGCAGCATGTCAGAGCCATCGTCAACCAGGGAGCCCTCCCGAAGATCATCAACATCAGCAGCAAGGACAACGGTCATGGACCAACCAGAGCGGGTCAGGCAGCATGCATCCTGCTGCACACCATGTGGAAACACGGTGATCTCCATGGAGCCTACAAGAAGGGTGGGTACAGGAAAGTTGATTTCATTAATGCCAGGACAACAAAGGCTGTGAACTCCGGACGAGGCTGAACTGAAGATCTATAACTCAAGTTGCACCTGCTGATAACAGCAACAATCACTTGATGCACTGTTCCTCCTTTTTAATGAAGCGCCTGTGTGTTTTTCAATGCTGAAAACATTGTGAACTGTGCCTACAtttcacttaaaggtcccatgaaatGGCTTTAAAAGTGTACATTTAATTAGTGATGCTGTTCGTGTTAGTTATGGCTTAAGGACAAACATGTATTTTGGATTATAGGACACAGGAAAAGAGcagaatattatattaaaaataatggaTAACCGAACAATAAACCAGCTTACACAAAAAGTACATTACCGAATATTTTGAGTTATGTTGACATCTCTTTCGATACATCAGATACTTCTGGCCACTGTCTTGGTGCCTCACGGTTAGAAAAActgacagatgaatgtagaaaCTTTAACTGAAAAAGCAACCACTCTCCAGCAAAAATACTGAAGTTTGTTTACTGTAGCAGCAGCTCAGCAGTTGAGTAAACTGTTAACTgcgtgttttgtttattttttgcacTTAAGACGACACTGTCATTAAACAAAGAACCACAATGAAAATATTCACACTAAAGAAATTGTGGAGGAAAAATCACAAACCATTGAAATGTTATACAAATGTATATAAAATGAATTTTTGAATACAATGATTTCCTATTGTAACACAACAACAAGCTGATTTCTTACTGCCTGACTTGAGTGGATTccttaaattaataaaatgttttgaataaaa

Function

GO: NA

KEGG:

id description
K12642 PKP2; plakophilin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309114 lncRNA downstream 45046 14231543 ~ 14231806 (-) True G227814
XR_005638083.1 lncRNA downstream 57254 14178745 ~ 14219598 (-) True LOC120553016
TU309112 lncRNA downstream 96346 14178772 ~ 14180506 (-) False LOC120553016
TU309104 lncRNA downstream 133593 14140179 ~ 14143259 (-) True G227804
TU309070 lncRNA downstream 326971 13949541 ~ 13949881 (-) True G227784
TU309249 lncRNA upstream 134207 14424237 ~ 14426492 (-) False waslb
TU309250 lncRNA upstream 136088 14426118 ~ 14426492 (-) False waslb
TU309275 lncRNA upstream 344080 14634110 ~ 14635577 (-) False grm8a
TU309356 lncRNA upstream 345625 14635655 ~ 14643449 (-) False grm8a
TU309360 lncRNA upstream 479968 14769998 ~ 14770247 (-) True G228019
XM_039792054.1 mRNA downstream 14592 14241997 ~ 14262260 (-) True rassf8b
XM_039791891.1 mRNA downstream 116783 14119739 ~ 14160069 (-) False zgc:113263
XM_039791887.1 mRNA downstream 139786 14119739 ~ 14137066 (-) False zgc:113263
XM_039791888.1 mRNA downstream 139787 14119739 ~ 14137065 (-) False zgc:113263
XM_039791886.1 mRNA downstream 139787 14119739 ~ 14137065 (-) True zgc:113263
XM_039792037.1 mRNA upstream 792 14290822 ~ 14309611 (-) True nudt4b
XM_039791292.1 mRNA upstream 36067 14326097 ~ 14333939 (-) True ube2nb
XM_039791293.1 mRNA upstream 44822 14334852 ~ 14338447 (-) True mrpl42
XM_039791291.1 mRNA upstream 49368 14339398 ~ 14348071 (-) True pwp1
XM_039791288.1 mRNA upstream 58716 14348746 ~ 14366431 (-) True ano6
unassigned_transcript_1491 other downstream 467173 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 617580 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 747074 13520265 ~ 13529778 (-) False LOC120553470
TU308500 other downstream 1988698 12284926 ~ 12288154 (-) True G227429
XR_005638137.1 other downstream 2427911 11838944 ~ 11848941 (-) False cracr2ab
TU309376 other upstream 769973 15060003 ~ 15061429 (-) False znf800b
TU309380 other upstream 772233 15062263 ~ 15088329 (-) False znf800b
TU309610 other upstream 1481208 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 2458812 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 3005092 17295122 ~ 17302198 (-) True G228465

Expression Profile