RNA id: XM_039792325.1


Basic Information

Item Value
RNA id XM_039792325.1
length 3385
RNA type mRNA
GC content 0.47
exon number 9
gene id pnpla3
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 25218540 ~ 25241938 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGTTATGGTTATAAGTCTAGCCTCCTTCATGAAACTTGGTTAAACCACATCTTCGACAGCAGATAGCGTCAACACTGGACAATAAAATAATCCAACAGGGGAATTTTCTTAGCTGAACACTAAAACAcaagtgtgcatgtaaacagaaaaacttgttttggttttagCTCTTTATATCATACAAAATCTAATACCCGCTCTTCGGTAAAAATAATTTTAGAATTAATTTCCTTATAGACGGACCACTGGACCACTGTTATCGGTGTTCTGATAGTTCTGACAGCATCTGAAGGCATCATTAGAAGTGCGTCCTGCACTTTCCTCTAAGCCAGTTGTTGACCTGTTGAGTAATATGCCGTCTGCCTTTCTCCGCTGAGCAGGACTGCTAGCCGTGTGACCGCTTCCCACTGTCCGCTCTCAGGTCTGCCCTGCCATGGTCGACCTAAACGGCGGCTGGAACCTGTCTTTCGCCGGGTGCGGGTTTCTGGGAATTTACCACATCGGAGTTGCTAGCTGCTTGCAGGAGAAAGCGCCCTACCTCATCGAAGGGGCCACCAAGTTGTACGGGGCCTCTGCCGGCGCTCTGACCGCCTCGGTGCTCGCTAGCCAGGCGTCCCTAGCCCAATGTTGTGAAGATGTGATCCAGGTGGCAAAAGAGGCCAGGAAAAGGAACCTGGGCCCCCTTCACCCCAACTTCAACCTGGTCAAGGTGTTAAAGTCTGGCCTGAATCGGGACCTGCCCTCTGATGCACATGTCCTGGCCTCGGGGCGGCTGTGCGTCTCGCTAACCCGAGTGTCTGACGGGCAGAATGAGCTGGTGTCGGAGTTCAACAGCAAAGAGGAACTCGTCGAGGCGCTGATCTGTAGCAGTTTCATTCCCATCTACTGCGGGCTGATTCCTCCATCCTTCAGAGGAGTGCGTTACGTGGATGGCGGGATCAGCAACAACCTGCCGCAGTCTGATTTGAAGAACACCATCACCATCTCTCCCTTCTCTGGCGAGTCTGACATCTGTCCCCGTGACGACTCCACCAGCTTCCACGAGCTGCGCTTCACCAACACCAGCATCCAGATGAACCTGGGCAACATGTACCGCCTCAGCAGGGCCCTGTTTCCCCCGGAAACCAAGGTAATGGCTGACATGTGTCAGAGCGGTTATAAGGATGCTCTGCGCTTCCTTGAAGAAAACAACCTGCTGATGCTCGATCGTCCAACCTCGGGCCCCGCCATGCCAGAGAGCCCGCCCACCACCTGCTGCTGTAAGCCTACAGAAACCACACAAGAGTGGGTGCTTCGGAGGCTCCGCCTACTGCGAAAACAGCACTGGTGGCTAGATGAGCAGATTGATCTGCCCACGCCCATCAAGAAAGtgttcTGTGAGGCCTGCCAAGACAAATCCGGCCTGTATACCAAGGTGTCCGAGATGCTGCCAGTCAGAGTGGCCTCCTACATGCTCATGCCATACACACTTCCTGTACAGTCGGCCTACTCAGTAGCCCAGAGGTTTGTGGAGTGGATCCCAGAGGTGCCAGCTGATATGCGCTGGCTGTGTGGGGTGGCAGGTGACATGTACCAACAGGCCTGGAAAGGAGCACCGGCTAGCTCTATTGGTGAGAAAGGCCTGAGGAAATGCCTGAGTGCGCCGCCTCTACCTACAGAGTGTGAGAAACCAATGCAGAGAGACAACCTGCCTGCTCTTTCCTCCATAGAGCTCCACGGTAACTCCTGGGAGAACGCCAAATCTACCTCCTCCTCGTCCCAAAATCATTCTCGCATCATCCCCTCCTCTCCGCAACAAGTCTGCTTCTATGTCGGCTCACAGGGTGATCAGCAGTAAAATGATTCAGGACCAGAACTTTAACAACGATTTGGTCAAATGTCCACTTTCTGTGAGGAGCTGGTGGATTGATGGACTGGTTAAATATTGAACCAATGGTGCGTAAATGTTTTAAGGAAACACACATTTATCTCTGACTCTGAACACTCCAGGCAGCACCGATATTTCACTGGGTGCTCTGGGAGACAGTGTCACAACTCACCCAGGATCATGGATGTGTTTTATTATCTCTTTTAATGCACAGCACAGAAATGTGTCTAGTTTCACAGTCTCACTACAACCCTACCTACCTGTTTGTTTAACATATactcaaacgtaacagtcattCCTCATTCCAGTACAGCTTATTGAATCAAGAGCAGGGTTCCCACACATCTGTCATGGACAACATTTCaaaacttttccatgacttttcaaGGACCCGTAATAAGATTTCAATGGGCATTTACAACATGTCACACGAATATAACTGTATACTACACTTTACTCCAAATGTTAATTATTGTATGAAAAGCTTTTTTCAATCTAAATGTTTATATTAGTTGAAGTACTTCAAACTACAGGCACAGTCAATCCACTTCCTTTATTATATCAGGCTGGAACTGGCTTTCCAGCATGAGGAGAAACCAGACCGATTGTACTATCAGTGCATTTTTAATGCATTTGATTGTAAAATCATTTTGGGATGCAAAAACAATGCATACATACTACATAATATTTCATAGCTCtctattcaattaaattcaattttatttatagtatcaaatcatagcagtagttatctcaagacactttacagatagagtaggtctagtggcaataatagtcacaataaagataatgctACTGtaactagaaataatagttgttcAGGGCTTAGTAGGGCATAGAagggcgtagcagggtatagcagggagTAGCAGGGTATAGTAGGGCGTATCAGGGCATAGTAGGCGTatcagggcatagtagggcatagtagggctGCTCACAGATACAAATTGCAGCGGTCATTAGAGAGCCATGAAATATTAAATGATCACCTCCCCGGTCTTATTCAAACGTATCAGATTCAAACATAATTTCAGCTAGCTGGAGGGAGAGATGGAACGCAGGGAGATAACGATAAAACGTACTGTACGTGATGgtaaacaaaacacacatcaaCGCAGATTAGAGCTACAGCACGTCTACAGCTTCAGTCAATAATACATGGAGGGTTATCCATGAAAGATTGCTGTAACAACTAATTACATTTAACACGACAAAATCCCTTGACTTTTCCACGCCtggaaaatgagattttaacattccatgacttttccaggtTTTCCTCGACCGTGTGAAGTGTCTCTATATATCTGTCTGTTTAGGTCATGTCTGTTTTTACAGTAGTGATGTCTACAGGCACCAAATGACGACTTCTAGGGTACACGATGCAACTTCTGGCAGCCATATTGGAGGACTGTCGGCCTCTTTATTAATTTAAAGATCCCCtccttctgtttttcttatgttTAAGTTCCCTTAAAATATGATATCTTGAC

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312293 lncRNA upstream 26597 25184812 ~ 25191943 (+) True G230249
TU312222 lncRNA upstream 419799 24795953 ~ 24798741 (+) True G230192
TU312111 lncRNA upstream 733023 24482310 ~ 24485517 (+) True G230109
TU311993 lncRNA upstream 954475 24260059 ~ 24264065 (+) True G230011
TU311974 lncRNA upstream 1102419 24112965 ~ 24116121 (+) True G229994
TU312317 lncRNA downstream 109939 25351877 ~ 25352174 (+) True G230260
TU312312 lncRNA downstream 120961 25362899 ~ 25373424 (+) False LOC120553523
TU312316 lncRNA downstream 134409 25376347 ~ 25377601 (+) True G230259
TU312409 lncRNA downstream 194213 25436151 ~ 25494197 (+) False G230327
TU312407 lncRNA downstream 233861 25475799 ~ 25494197 (+) False G230327
XM_039792316.1 mRNA upstream 105347 25019376 ~ 25113193 (+) True mpped1
XM_039792315.1 mRNA upstream 108115 25011234 ~ 25110425 (+) False mpped1
XM_039792167.1 mRNA upstream 226375 24869947 ~ 24992165 (+) True scube1
XM_039792169.1 mRNA upstream 226375 24887843 ~ 24992165 (+) False scube1
XM_039792168.1 mRNA upstream 226376 24869947 ~ 24992164 (+) False scube1
XM_039792326.1 mRNA downstream 2599 25244537 ~ 25260350 (+) True LOC120553672
XM_039791863.1 mRNA downstream 22058 25263996 ~ 25349341 (+) False ttll12
XM_039791862.1 mRNA downstream 22058 25263996 ~ 25347553 (+) True ttll12
XM_039792038.1 mRNA downstream 120944 25362882 ~ 25373996 (+) True LOC120553523
XM_039792039.1 mRNA downstream 120944 25362882 ~ 25372857 (+) False LOC120553523
TU312157 other upstream 440282 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 905602 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 1331116 23887337 ~ 23887424 (+) True trnay-gua_62
TU311875 other upstream 1369916 23833031 ~ 23848624 (+) False adm2a
TU312620 other downstream 796349 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 1130798 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 1130798 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 1827139 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 2361067 27603005 ~ 27603702 (+) True G230842

Expression Profile