RNA id: XM_039792326.1


Basic Information

Item Value
RNA id XM_039792326.1
length 2172
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC120553672
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 25244537 ~ 25260350 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCACTCAGCAGAGAGTAAAAGGATGGCGGAGGACGGGAGGGATGAGTTGGTGGCCACTGACGATGAGTCCGACCACACAGCTGCAGACGGGAGCAGCAGCCTAAACAATACGATGGTGGAAGAGGGCTCCACTCTCGTGCGCAGAATGGAGATCTGCGTTGCCGAGGCCGAGAAAAGGAGTGGTAAAAACACAGTGAACATGCAGGAAACGTTCACTGTGTACCTCATCGAAACACGGCCCATGGATGCAGTCGCGGAAGGTCGTAACCCAGCCCCTGACTCTCTGTGGAGGAGATACAGTGAATTTGAACTTCTGCGTAACTACCTGCTAGTTACCTATCCATACATCGTGGTCCCCCCTTTGCCTGAGAAGAGGGCGGAGTTTGTGTGGCATAAGCTGTCTGCTGACAACATGGACCCAGATTTTGTGGAGCGGCGCAGGATCGGGCTGGAGAACTTTCTGCTTCGCGTGGCATCACACCCAGTCCTCTCCAATGACAAGATCCTCCACCACTTTCTCACTGAGGAATATGGCTGGAAGGAAGTGGTGTATGAGACAGGATTTCAGGCAAAGGCAGATTCCAGGATCAGGGCTCTCAGTGCCACCTTCAGGGTGAGAAATCCAGATAAACGCTTCATGGAGATGAAACACTACAGCGATCAGCTGCAATCTCACACATCTCAGCTGCTCCGAGCACGGGCAAGGGTTGCAGATCGACTCTACGGTGTTTACAAGGTCCATGGGAACTATGGGAGAGTCTTCAGTGAGTGGAGCGCCATAGAGAAAGAGATGGGAGACGGACTGCAAAGTGCCGGTCATCACATGGATGCGTATGCTGCCTCAATAGATGATATCTTAGAAGAAGAGGAACATTATGCAGACCAACTGAAAGAATATCTCTTCTATGCTGAAGCTCTGAGGGCAGTGTGCAGGAAACACGAGCTGACCCAGTTTGAGCTTGAGATGGCCTCCCAGGACCTCATCTCAAAGAAGCAGCAACACGAGGAGCTGGCTACAGGGATTGTGCGGACGTTCTCCTTCAAAGGCATGACCAACAAGATTTTTGGCCAAGAGGCACCTGTGCAGAGGGAGGCCAGAATCAAGCTGCTGGAGGAGCTAATAGCAGAGGGGGAAGACactgttaaggagaaaacagtCGAGTGCGAAGAGCACGTTGAAAGGGCGTGGGTGGATATGCAGCGCTTTAAGGAGCAGAAAGACAAAGATCTGCGGGAAGCGCTCATCAACTATGCTGTCATGCAAATCAGCATGTGCAAAAAGggaATACAAATGTGGAGCAATGCCAAAGAATGTTTCCTCAAGATGTAAAAGTGAAGCCATATTCAAAGGATTCCCAGCCTCAGTAATGCTCAGCTGTGGATGCTGGAAAATGACGCCAATGTCTTGTGGTTATGGTTTACAAACAACATGCGTAAAAAGATTATGTAGTTTCAAGAATTTTCACAAAATGCAACTAATGCTCAGTAGTAATTGACATTCACTGTTAACCTGCGGTGGAGTGAGAAAAGGGAGGTCCATGAGTGAGACACTGGAGACCAGGGTTCACACACTGGCTGGACCTTCTTAATATCTAGCCAAGACCATTTTCTCTCACCTTAAGGAGGCAGTTCGACAACTGTACATTGTCAAAGTCATGTCACTAGTTGGGAAGTGAAGTGACTTTGATAGATGGGAAGTGTGGAGTTTGATAGACGTGGCCATTTAACAGCCAGAGctttttggagcttgacccatACAAGGGACTTATAGTCTGGCAATCACAGACACTGCTGCGCTGATATTGACCAGTCTTTTTAATATTGTGTATCTTCTCAGTCAGTTTATGGATCTGTAATACTAAATTCCTTGAGTGCAAAGTGTACTGATGGGTGCTTTTACTTCTATGTAACCTGTTCAAACCCTGTGAATCGTTCAGGCTGGTCTGAAACCTTTGAATCAAACTCTGgtatggaggaggaagaggaagaggaggcatatacgtatgtatgtatatatatatatatatacacacaagaTGGTTACACAAGATAAATTGGTAACCATCAGAAAGTgaaaagcattttaaaacaGTGGCTTGTttcacataaatacattttgacttCAGATAGACATCTAgagccctatcttgcacccggcgcaccGCGGCGCA

Function

GO: NA

KEGG:

id description
K17919 SNX4; sorting nexin-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312293 lncRNA upstream 52594 25184812 ~ 25191943 (+) True G230249
TU312222 lncRNA upstream 445796 24795953 ~ 24798741 (+) True G230192
TU312111 lncRNA upstream 759020 24482310 ~ 24485517 (+) True G230109
TU311993 lncRNA upstream 980472 24260059 ~ 24264065 (+) True G230011
TU311974 lncRNA upstream 1128416 24112965 ~ 24116121 (+) True G229994
TU312317 lncRNA downstream 91527 25351877 ~ 25352174 (+) True G230260
TU312312 lncRNA downstream 102549 25362899 ~ 25373424 (+) False LOC120553523
TU312316 lncRNA downstream 115997 25376347 ~ 25377601 (+) True G230259
TU312409 lncRNA downstream 175801 25436151 ~ 25494197 (+) False G230327
TU312407 lncRNA downstream 215449 25475799 ~ 25494197 (+) False G230327
XM_039792325.1 mRNA upstream 2599 25218540 ~ 25241938 (+) True pnpla3
XM_039792316.1 mRNA upstream 131344 25019376 ~ 25113193 (+) True mpped1
XM_039792315.1 mRNA upstream 134112 25011234 ~ 25110425 (+) False mpped1
XM_039792167.1 mRNA upstream 252372 24869947 ~ 24992165 (+) True scube1
XM_039791863.1 mRNA downstream 3646 25263996 ~ 25349341 (+) False ttll12
XM_039791862.1 mRNA downstream 3646 25263996 ~ 25347553 (+) True ttll12
XM_039792038.1 mRNA downstream 102532 25362882 ~ 25373996 (+) True LOC120553523
XM_039792039.1 mRNA downstream 102532 25362882 ~ 25372857 (+) False LOC120553523
XM_039792040.1 mRNA downstream 108906 25369256 ~ 25373996 (+) False LOC120553523
TU312157 other upstream 466279 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 931599 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 1357113 23887337 ~ 23887424 (+) True trnay-gua_62
TU311875 other upstream 1395913 23833031 ~ 23848624 (+) False adm2a
TU312620 other downstream 777937 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 1112386 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 1112386 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 1808727 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 2342655 27603005 ~ 27603702 (+) True G230842

Expression Profile