RNA id: XM_039792328.1


Basic Information

Item Value
RNA id XM_039792328.1
length 2816
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC120553673
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17208626 ~ 17220357 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAAAGCCCACAAGGTAAGATCTGTGTCGCCTCTCCTGCTGCTCTGAAGGAGATGCTCTCTCTACTTGACGGGTGGATTTTACACGGAGGAGACGCACACCGTCCGCTGCTGCAATCCATCCGCTGTTCATCCTTTGCCCATTTCATATACACCTTTGCCATTTAGACGATCGGAGAGCGGAACATTTGAAAAGCGGGTCCGATGGCACAGTGGACAATACTTGTGTTGTCTTTATACGGAGTTCTGCATGGACAAGAGATTCAGCTTCCTACTATACAAAAGTGCTGTCAGGATGGGATGACTCGGGCCCAGAATGGACAAGTCTGTACAATCCTCCCGCTCATCTCCTCCTCCCACATCTGCATGATCGCCCAGGAGCAGTGCTGTGCAGCAGCAGTAAGAGACCAACTCTGTGACAGTGGCATGGAGATGGCCAAGGGACAAGGGGCCTGTGAGAGGCCCTTCTTCGAAGGAGATCCCTGGGAAACCAAAATCTCTAAGATGTGTTGTGACTGCTGTATGCTCGGCCTGATGATGGCAAGCGAGGGTTTGAGCTGTGAGCTCCAGGGTTTGTTGCTGGGGAGATGGTGTGCGTACCCAGCTAAAACCTGCTGTggcaaaaacacaacagaggaAACCGAACCAAGTACTATTGTGACAGAAAAGCTTGAGGCCGGAGTTACCGTTACCGACATGCCTCCTGAGGGATTGATCCCCTGTAGAGACTCCAATTGCTCCCAGTTGTGTGTAGGTGATGGTTTATGTGCTTGCTTTGGTGGTTATCAACTGCAAAATGATGGAGTGACTTGTGAGGATGTTAACGAGTGTTTGAATGGCGGTCACAACTGCGTCCTCGGCCAAGTTTGCATCAACACAGAGGGTTCCTTTCGCTGTCAGAGGGAAAGCAGCTGTGGCACCGGGTATGAACTCAGAGATGACAACAATTGCCAAGACATTAACGAGTGCACTTTGGGGACCCATAACTGTGGAGCAGAATTTGTGTGCACCAACACAGAGGGCTCGTTCCGCTGCCACCCAAAGGAGAGGTGCTCAGGCGGTTTCCTTCAGGACGCCATCGGCAGCTGTATTGACATAAACGAGTGTGTGGCCCATACCAGTCCATGCCTGCCTGGCCAGACGTGTATCAACACAGTGGGCTCCTACACCTGTCACAGAAACATAGTCACCTGTGGACGCGGCTATCATCTGACTGAGGACGGCACGCGTTGTGAAGATGTGGATGAGTGTCGTACAGGGAACGTGTGCGTCAACCACGGTTGTGTCAACCTGGTAGGCTTTTACCGCTGTGAATGCAGAACTGGCTTCATCTTCAACATTATCACCAAACTGTGTGATGACATCAATGAGTGCAGGGATTATCCCGGGCGACTCTGCACCCACAAGTGTGAGAACACAGAGGGGTCCTACAAGTGCAGCTGCACCCTTGGCTTCAAGCTGTCCCAGGACGGCAGAAACTGTGAAGATGTCGATGAGTGTGAAGCCAACCCTTGCAGCCAGGAGTGTTCAAATGTCTATGGCTCATACCAGTGCTACTGTCGCCGTGGTTACCAGCTGAGTGACAACGATGGGATAACATGTGAAGATATTGATGAGTGTGCTCTGCCTACTGGAGGTAATGTGTGTTCCTACCGCTGCTCCAACGCCCCGGGAAGTTTTTACTGTACCTGCCCACCCACAGGCTACACACTTTCACACAATGGACGCACATGTCTAGACATTGATGAATGTGCAGCTGGTAGACATACCTGTTCTGTCTCCGAGAGCTGCTTCAATGTCCAGGGAGGATTTCGCTGTCTGTCCTTTTCATGTCCTCCAAACTTCCGGGTAGCAGCACAAGGCCGTTGCGAGCGATTAACTTGCGAGGTCACGCAGGATCCTGCGTCGTGTTTCTTGCTCCCGCTGAGAATCTCCTTTTACAACATCAGCTTCCCCACCAACACTCCCATCCCCGCTGATGTTTTTAGGATGGGACCCTCCAATTTCGTGCCGGGTGACAATATGCAGATCAACATAGTCTCCGGTGACGAGGAGGGATACTTCCTCGTGCAGCAGCATGCTCATGGAGGAGAGATCTCACTGCGCCGTACCTTAACCCAGCCCCGGGACTTTATCCTGACCGTGGAGATGAGGCTGATTCGCTACGGGATGGCACATCTGTACATGGCCAAGATTGCTGTGTTTGTCACGCACGAGCAGCCCATCTGGCCCTCAAGAACATTTCCATATTAGAAGGCTGTGAAATTAATTTGGAGGGTTTTAAGTCTATCCCTATTTTGTCCTCACCACTGCTCTTATTACATTGTTGGATTTCATTTTCATctatctttttctttatttaggaGTTACAGCTCCAGGCTTCCATCTACTCCTCAATACAGTTAATATGGGCCATATCTATAATTCACCCATAGCTATAATGATGCTACAGCAGTTTGTTATGGTGAATTTGAGTGtttattcaacaacaaaaatcgaTTTATTGGTATAGCTAAATAAAGTGCCATCTTTTCTTTTCAGCATCCATCTGAGATAATTGATAGCACTCTCATGTTTGTATGCTGAAAATGAAGCTTCAACAATCAGCAGCCGGCTAGCTTAGTTAAGCacaatgtagtctatatccactacGTTGCGTATTCCTGTATCATAGAGTAAAATAATTGATTTTACAGTAAATGATTGGTTATCAAGGCAAAAAGTTACAATTGTTAATTGAATTGCATTTGTATATGTAATATGGTCTTGGGGATGCATTTCTTTAAGCAATACATTGTTTTTCAGCTTGTTATACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309887 lncRNA downstream 74373 17137270 ~ 17138275 (-) True G228401
TU309843 lncRNA downstream 203058 17007945 ~ 17009590 (-) False slc37a3
TU309844 lncRNA downstream 203667 17007749 ~ 17008981 (-) False slc37a3
TU309840 lncRNA downstream 205648 16952943 ~ 17007000 (-) False G228363
TU309917 lncRNA upstream 848 17221205 ~ 17222228 (-) True G228423
TU309936 lncRNA upstream 23108 17243465 ~ 17243980 (-) True G228439
TU309981 lncRNA upstream 52591 17272948 ~ 17275477 (-) True G228474
XR_005638072.1 lncRNA upstream 181891 17402248 ~ 17402832 (-) True LOC120552976
TU310039 lncRNA upstream 297306 17517663 ~ 17600185 (-) True G228522
XM_039791800.1 mRNA downstream 5194 17196941 ~ 17207454 (-) True atxn10
XM_039791719.1 mRNA downstream 77518 17116753 ~ 17135130 (-) True pparaa
XM_039791082.1 mRNA downstream 96195 17114008 ~ 17116453 (-) True cdpf1
XM_039792344.1 mRNA downstream 100205 17109537 ~ 17112443 (-) True LOC120553682
XM_039791557.1 mRNA downstream 191913 17007724 ~ 17020735 (-) True slc37a3
XM_039791154.1 mRNA upstream 1977 17222334 ~ 17234693 (-) False trim24
XM_039791152.1 mRNA upstream 1977 17222334 ~ 17234692 (-) True trim24
XM_039791151.1 mRNA upstream 1977 17222334 ~ 17234675 (-) False trim24
XM_039791853.1 mRNA upstream 85866 17306223 ~ 17331378 (-) True LOC120553454
XM_039791144.1 mRNA upstream 345214 17565571 ~ 17570648 (-) True creld2
TU309744 other downstream 389216 16748842 ~ 16823432 (-) True G228291
TU309610 other downstream 1420795 15771238 ~ 15791853 (-) True G228191
TU309380 other downstream 2124319 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 2151219 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 3402969 13809607 ~ 13809679 (-) True trnak-cuu_13
TU309971 other upstream 74765 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 610315 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 610315 17830672 ~ 18100995 (-) False tafa5a
XR_005638136.1 other upstream 1149318 18369675 ~ 18421407 (-) False gramd4a
unassigned_transcript_1496 other upstream 2218160 19438517 ~ 19438599 (-) True trnal-cag_18

Expression Profile