RNA id: XM_039792335.1


Basic Information

Item Value
RNA id XM_039792335.1
length 1771
RNA type mRNA
GC content 0.47
exon number 2
gene id phlda1
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 22739717 ~ 22743179 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACAGGCAGCCTCCTCACTACAACCAACAGTACTCACACCACCGCagtcagagcagcagctcatGCCCCCGCCTGCTCCGGGATAGACATCCGCCCGTCCGTCCACTGAAGCAGCCAGGGAGCTGCAAGCGTCCGGGTGAAGATGCTGGAAAACGGGAGGAAGGTGTTCAAGGAGGGTCTGCTGGAGAAGCGAAGCGACGGGCTGCTGCAGCTCTGGAAGAAGAAGCACTGCGTCCTGACCGAGGACGgcgtgctgctgctgccgcccaAGCAGCACGACCAGCCGCAGCACGGCGGCGGGGACACGGGCAAAGTCAAGGAGCTGCACTTCGCCAACATGAAGACGGTGGACTGCGTGGAACGGAAGGGCAAGTACGTCTACTTCACGGTGGTCATGCTGGAAGGGAAGGAGATCGACTTCAGGTGCCCGCAGGACGAGGGCTGGAACGCGGAGATCACCCTGCAGATGGTCCAGTACAAGAACCGGCAGGCGATCCTGGCCGTCAAGTCCACCCGGCAGAAGCAGCAGCTGCTTGTCGTGCAGATGCCCGGTCAGAAGACGGTCCGCAGCTCGCCGAACGTTGCGTGACCTGCGGCGAGTCCCGCGGACACTGGTGCACCATTGTTAGCGGTTAATTGGACACTCAGCTGGAGGATGAATATCTCCCCCTGCTGCTTCACCACAGACCTCCATTCTCCAGCAGAACCCCTCTTCCACACAGACCAGCTTCCTCTTTTCAATACAGAGACTTATTTCACAAAAGACTGATGGACAAAAAGCATGTGAGAAGACAACTGTACTCTACCGTGCGATGGTTATCCCTTATTTATtagatgtatatatattttctataaaaaaaaaatactatgttGTTGATGAATGTTCCCGTGTGTTTGTTGCTAGAGTGGAACAAGAAATCCTCGCTCGGAGGTTCCCTagaccacatgttacacacaaagTCCATAGGGTATAAGCTCACATATCTTAGGATGGTTGCTGTAGGTTAGTCAGATCACTTCCTTACCGCTAACATTTGTGTCATTGTCCTTGTTTTTCAACTGAACCAAAgaatcattacattacattttctttctcgTGCAGTGTTACAGCTCAGAATATACTATAGCCTACTAAAATACTATATGATGAGACACCTGCATGATGCTattttgtttgcatgtgttgcACCTACTTTTATTCAGCCCTGCTTTTTCAGAGTTAGTATAACTGCTGCACAAAAGAGGCAATGTTTGCAGACAGTATAAGACAGTCAATGGTACACATAGGTCTCTTGAATAAACAGGTTATACTGTTCTAAATTTTTTACTTACTGCAATGTAGCTAATGTGCTAACTAGCTTGCTTAATGTTATTGTAAGTAAGCTACTGTGTTAACGAGCTTGCATAACGTTATtgtaagttagctagctactgtgCTAACGAGCTTGCTTACTGTAAGTTAGCTGCTGTGCTAACTAGCATAGTTACTTTTACTTAGCTACTCAGCTAATTATCTTACTTACTGTAAATTAGCAACTGTCCTAACTAGCTTACTTACTGTATGTTAGCTACTGTGATAGTTTGCTTACTGTAAGGTAGCTACAGTGCTAACTGACTTGCTTACTGTAAGTTAGGTACTGTGCTAAAGAGATGGCTTACTGTAAGTTGGATACTTTGCTAACTAGCTTGCTTACTGTAAGTGAGCTGCTGTGCTAGCTACGAAGGGtgtgttccatttgtactcagaAGTCGGAAATTCCGAGTTCTAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311420 lncRNA upstream 385329 22354115 ~ 22354388 (+) True G229559
TU311303 lncRNA upstream 413460 22325795 ~ 22326257 (+) True G229494
TU311302 lncRNA upstream 419189 22320266 ~ 22320528 (+) True G229493
TU311300 lncRNA upstream 445957 22293497 ~ 22293760 (+) True G229491
TU311294 lncRNA upstream 608321 22129026 ~ 22131396 (+) True G229485
XR_005638125.1 lncRNA downstream 22922 22766101 ~ 22771633 (+) True LOC120553177
TU311500 lncRNA downstream 89771 22832950 ~ 22833161 (+) True G229621
XR_005638089.1 lncRNA downstream 233294 22976473 ~ 22994911 (+) True LOC120553039
TU311539 lncRNA downstream 285660 23028839 ~ 23037327 (+) True G229645
TU311555 lncRNA downstream 361001 23104180 ~ 23186555 (+) True G229659
XM_039792140.1 mRNA upstream 1701 22715428 ~ 22738016 (+) True nap1l1
XM_039792138.1 mRNA upstream 1701 22715428 ~ 22738016 (+) False nap1l1
XM_039792139.1 mRNA upstream 1701 22715428 ~ 22738016 (+) False nap1l1
XM_039792136.1 mRNA upstream 64523 22633221 ~ 22675194 (+) False osbpl8
XM_039791089.1 mRNA downstream 149634 22892813 ~ 22917577 (+) False LOC120553032
XM_039791088.1 mRNA downstream 152836 22896015 ~ 22917577 (+) True LOC120553032
XM_039791092.1 mRNA downstream 213525 22956704 ~ 22966965 (+) True LOC120553035
XM_039792453.1 mRNA downstream 278236 23021415 ~ 23048594 (+) True LOC120553757
XM_039791992.1 mRNA downstream 449547 23192726 ~ 23206478 (+) True krr1
TU311231 other upstream 871420 21867201 ~ 21868297 (+) True G229428
TU311225 other upstream 880508 21857983 ~ 21859209 (+) True G229422
TU311228 other upstream 889116 21849211 ~ 21850601 (+) True G229425
TU311226 other upstream 892697 21837922 ~ 21847020 (+) True G229423
unassigned_transcript_1526 other upstream 1142839 21596768 ~ 21596878 (+) True trnal-caa_47
XR_005638156.1 other downstream 572244 23315423 ~ 23440663 (+) False kcnc2
XR_005638155.1 other downstream 572244 23315423 ~ 23438926 (+) False kcnc2
XR_005638157.1 other downstream 572244 23315423 ~ 23438184 (+) False kcnc2
TU311873 other downstream 1089852 23833031 ~ 23848624 (+) True adm2a
TU311874 other downstream 1089852 23833031 ~ 23848624 (+) False adm2a

Expression Profile