RNA id: XM_039792344.1


Basic Information

Item Value
RNA id XM_039792344.1
length 2100
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC120553682
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17109537 ~ 17112443 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCTTCACTCATTGCTCCCTCTAACGCCATGTTGGCTGTTATGAGTTGACTTGTTGTTTTCATCAGTCTTACTACGGACTTGACAGGAGTGGCTCTTTTAAACTCCCCCCCTGCGCCCTTGGAGACGCTTTTATTCCATTTTTGCGCGTACGCGTTTTGGATGATACGCGCGGAGTATGCACGCATCATCCCTGTGACTTTGCATTTTAAAGGAATACTACTTGGAAATAGAAGTTTAAAAGGGtttggttgttgtttgttttgtttccccccaccacccccccacccTTGTCATATGTGCAACAAAATGTCAGATGTTCGCCTTTCTAATGCGAGCCCGACATTGGAGAGGGTGGATGCGCGGCAGCCAGACAACGTCAGACCTTCGGTCCGCAGAAACCTTTTCGGCAGACCTGACCCAGCGGAGATACAAAGGAATGTGACGGCTTCGATACAGGAAGATGTGCGGAGTTTCACGGAGACGTACAATTTCGATCCCATCAACGAGACACCGCTCGCTCCGCGCAATTACGACTGGCAGGAGGACCGCAACGCGCCGGAGTTTTATGTCCGACCGCCTCACGGGAGCCAGCGGCCCCAGCAGCGAGATCAGGACTTCCCCGGCGAAAACAACCGGCAGGATGCCGAGACGAGGTGTGAGCGCCAGTCGGATCAACCACACAGAGATGGTTCGAGAAAAAGACGTTCAGGTCCCTGCTCCAGCGAGTGTCAGAGTAAAAGGTCGCATACCGACGAAGATGAGGATGAAGACCAGTCGGACGGTGCAGGAAGTCAGGCGGTAAAAGCAGCGGAGGAGAGACCCAGCAGGTCCGAGAAGAGCGCGGAGGTGCAGTGAAAAGCAGTGCCAGAGCGGGAGACCTGTTGCTGGTGGAATACTGTAGCCTTTCTCATCACCTGACAGATGGgagagaaaatataaaaaacgcAGCCTTTTCCTAaagaagggaggaggagaggctgCACAAGCACTGATTATGTACACTATCAAGTTTTGGCActcattttaattaaattgcCTCAGAAGCAGCAGACAATGTAGCATTGTGCAAATGGattttgccctttttttttatctactaCCTATGTTTCAGATgtagcacataaaaaaaaagcatattatGCTTTTCATACCTTTCGTTAAATGTTTTTGAATAAGTGTGTGACTTTGACTCGGGAAGTTGCAGTGCAATTTCCAACAGAGaaatattattttgttaaaGTGGTCATATTGTGTCATTATTCAGGTAATTGATgtaagttttaaaaaatgcaGATATCAAAAGTCAGGGTTGTGTGGAAACAAAATGTCTTCACTTTTTCTATGGCTTTATTTGTCCCAGTGTTATAAATCTTGTTTTTGAAGGCCCAGATGGCCACACTGTAAGATGAGGGTCCATCTAACTGGGAACCGCCATGACAGataaagtttacatgcaaatATATTCTCCCTCTTTCAcccattttttttcttagaatgtaattattattacattttttttgtattgtattttttgttttgtttttgccaaaGTTTGAACCTTTTTGTTCTGGGGGTGAGGGGAGGGGTGGGAGCTAAACTGCTGAGCAATATCCAACCAAATTGTAACAGTATTTGCTAATAATCCTAAGaattagcttttattttttaaattaggtttatatTTTAGTGACTTTTAGGTCACATAATCCGCCCCTTGTAATAATCGGTGTAGTCCAGgttaacataaataaaatatgttacTGCACTGGGCTACTTATGCAAATATGTGAATCAAAGATTTGTCTTTGTGGTGTTGAATTCATGTGGAACATGTAATTGCACTATTGTtgatttctcttcttttttttttttgagggcagaaaaacaaagtgacaCTGCCTCGTTTGGTGTAAAACTTTGtagtgtaccttttttttttttttttaaaaacactgaaaaaattatactaaCTTATTTATGTTGAGCTTTTTGTTGTGGGTGTATGTATAGCTTCCCAAAGCGACaatttttgtaaatatatattttaatttttaagataaataaactgttgcaaAACTGAGCCTAATAATCGATTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309843 lncRNA downstream 99947 17007945 ~ 17009590 (-) False slc37a3
TU309844 lncRNA downstream 100556 17007749 ~ 17008981 (-) False slc37a3
TU309840 lncRNA downstream 102537 16952943 ~ 17007000 (-) False G228363
TU309837 lncRNA downstream 102537 17004002 ~ 17007000 (-) True G228363
TU309834 lncRNA downstream 159731 16914607 ~ 16949806 (-) True G228360
TU309887 lncRNA upstream 24827 17137270 ~ 17138275 (-) True G228401
TU309917 lncRNA upstream 108762 17221205 ~ 17222228 (-) True G228423
TU309936 lncRNA upstream 131022 17243465 ~ 17243980 (-) True G228439
TU309981 lncRNA upstream 160505 17272948 ~ 17275477 (-) True G228474
XR_005638072.1 lncRNA upstream 289805 17402248 ~ 17402832 (-) True LOC120552976
XM_039791557.1 mRNA downstream 88802 17007724 ~ 17020735 (-) True slc37a3
XM_039791555.1 mRNA downstream 121982 16983903 ~ 16987555 (-) True sapcd1
XM_039791552.1 mRNA downstream 130502 16972532 ~ 16979035 (-) True prdm4
XM_039791554.1 mRNA downstream 137090 16965571 ~ 16972447 (-) True tmem209
XM_039791553.1 mRNA downstream 144593 16917305 ~ 16964944 (-) True ahcyl2b
XM_039791082.1 mRNA upstream 1565 17114008 ~ 17116453 (-) True cdpf1
XM_039791719.1 mRNA upstream 4310 17116753 ~ 17135130 (-) True pparaa
XM_039791800.1 mRNA upstream 84498 17196941 ~ 17207454 (-) True atxn10
XM_039792327.1 mRNA upstream 96183 17208626 ~ 17220355 (-) True LOC120553673
XM_039792328.1 mRNA upstream 100205 17212648 ~ 17220357 (-) False LOC120553673
TU309744 other downstream 286105 16748842 ~ 16823432 (-) True G228291
TU309610 other downstream 1317684 15771238 ~ 15791853 (-) True G228191
TU309380 other downstream 2021208 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 2048108 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 3299858 13809607 ~ 13809679 (-) True trnak-cuu_13
TU309971 other upstream 182679 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 718229 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 718229 17830672 ~ 18100995 (-) False tafa5a
XR_005638136.1 other upstream 1257232 18369675 ~ 18421407 (-) False gramd4a
unassigned_transcript_1496 other upstream 2326074 19438517 ~ 19438599 (-) True trnal-cag_18

Expression Profile