RNA id: XM_039792347.1


Basic Information

Item Value
RNA id XM_039792347.1
length 1270
RNA type mRNA
GC content 0.51
exon number 6
gene id asb13a.1
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 23924156 ~ 23933876 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTCTCTTCGACACAGGCAACGTCAGCTAATGTTTTGGAGTCCTCTGCTGGCTGCAAccttatactgtctatggctgcAACCCAGCACTAAGTGTTTACCGGTAAAACATGGACGTGACGGCCGCCCGCCGTTCGTTTCTGTGCGATATCGGTTTCTGGGCAGACCGGACTGCCCTGCATGAAGCTGCGTCCCACGGCAGGGCCCTGCAGCTCAAACAGCTGATAGAAAGTGGAGCATCGGTCAACGTGGTGACGGTGGACAACATCACTCCGCTCCATGAAGCCTGCATACAGGCTCATCCAAACTGTGCCCGGCTGCTGCTGGAGGCTGGAGCCCAGGTGGATGTACGGACCATCCATGGGAGCACTCCTCTGTGTAACGCCTGTGCTTCTGGCAGCCTGGAGTGTGTCAAGCTGCTTCTGGAGTACGGAGCCAAAGTTAACCCTTCTCTCACTGCGCTCACCGCCTCGCCGCTCCACGAGGCCTGCATACAAGGTAATGTTGAAGTAGTGAGGCTGATGATAGCCAGCGGTGCCCAGCTGGAGGCGTATGACGTCCACTTTGGTCCCCCGCTCCACATCGCATGTGCTAAAGGACACGTGGACTGTGTCAAGGAGCTGCTTCATGCAGGTCAGCAGGAAGGCTGCAGGTCAGAAAAGTGTGGTGCCAATGTGAACTCAGTGAAGTTCCACGAGATAGCTCTGCACCATGCAGCACGAGTGGAAATGGTGGACATGATCGAGCTGTTGATGGAGTTCGGAGCCAACGTGTACGCCAGCGACAACCTGGACAGAAAGCCTGTAGACTACACAACACCTGCGTCTCCCGCTCACACCTGCCTCAGGTTTTATGAAAGAAATCCTCTGAGCCTGCAGCAGCTTTGTCGAATCACTGTGAGGCTGAGGCTTGGTATCAAAGCCTCGGAGGCCATAGGCCAGCTGGACATATCCCACCGCATCCACAGCTACCTCCAGTACTGTGATCATCCTGCATCACTACAGAGGGACACGTGGACAGATTCATAAGCCTCAATGAGAGACTGGTGTTTGATTTCaggtataataaaaaaaagaagcactgTGGACAATATCTGCTAATTGCAAATATATCAGGTGGTCAATCAGGAATTAAGGTTCATAGGGCCGTTCAAATTATCTCATTTAAATTGGCAGCAAATATAGGAATTGTTTCTCAAAATCATTTGTCGTTTCTCAAAATCATTTGTGTATACAAAATGTTgccaaaataaagaaatgattattcccaaa

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311911 lncRNA upstream 7768 23915811 ~ 23916388 (+) True G229938
TU311778 lncRNA upstream 244848 23667703 ~ 23679308 (+) True G229841
TU311754 lncRNA upstream 338657 23579721 ~ 23585499 (+) False G229821
TU311755 lncRNA upstream 338657 23579721 ~ 23585499 (+) True G229821
TU311602 lncRNA upstream 483616 23436565 ~ 23440540 (+) False kcnc2
TU311915 lncRNA downstream 10182 23944058 ~ 23945640 (+) False LOC120553686
TU311919 lncRNA downstream 13817 23947693 ~ 23948538 (+) True G229945
XR_005638093.1 lncRNA downstream 36071 23969947 ~ 23971613 (+) True LOC120553072
TU311951 lncRNA downstream 60690 23994566 ~ 23994835 (+) True G229974
TU311953 lncRNA downstream 131338 24065214 ~ 24066989 (+) True G229976
XM_039791739.1 mRNA upstream 10343 23899241 ~ 23913813 (+) True gdi2
XM_039791740.1 mRNA upstream 26258 23886747 ~ 23897898 (+) True ankrd16
XM_039792269.1 mRNA upstream 79263 23833018 ~ 23844893 (+) False adm2a
XM_039791279.1 mRNA upstream 217188 23686014 ~ 23706968 (+) False ppp6r2a
XM_039792350.1 mRNA downstream 424 23934300 ~ 23944186 (+) True LOC120553686
XM_039792096.1 mRNA downstream 275743 24209619 ~ 24249507 (+) True mkln1
XM_039792097.1 mRNA downstream 275743 24209619 ~ 24248462 (+) False mkln1
XM_039792460.1 mRNA downstream 367889 24301765 ~ 24308444 (+) True ift46
XM_039791160.1 mRNA downstream 375666 24309542 ~ 24314707 (+) True LOC120553083
unassigned_transcript_1527 other upstream 36732 23887337 ~ 23887424 (+) True trnay-gua_62
TU311873 other upstream 75532 23833031 ~ 23848624 (+) True adm2a
TU312075 other downstream 376060 24309936 ~ 24312938 (+) False LOC120553083
TU312157 other downstream 686936 24620812 ~ 24778258 (+) True G230148
TU312620 other downstream 2104411 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 2438860 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 2438860 26372736 ~ 26381109 (+) False mrps33

Expression Profile