RNA id: XM_039792383.1


Basic Information

Item Value
RNA id XM_039792383.1
length 1850
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC120553694
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10235016 ~ 10241505 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAACTGTTTGAGCTTCTCCTTTTAAAGACATCATTAATCCGGTATGGCCACATTCAGGACTAAATAATGCTGGCAGCCGCTTACGTGGCTGAGGCGTTTAAGGGGCTTCTTTCGCCTGTCGGAACTATGAGAGTTTAGGTTGGGGCCTAACGATTGAACAAATTGGCAAACGCAACTGAAAATTGTAATGTTGTTTCAAACCATTGTGTGGCATGAGCTAAAAGATAAAACATCAATATATTTCATACATCAATACTGGCTATATTTGTTACAGGTTTTGTGTTTCTAACTAAGTAATCATGTTGGTTATTGTATATACGAGCTTAAGAGAAGCATTTGAAGGCGGCATTTATCCAAGGAACAGGGTAACGTTAAGCAAAAGGATTGTTTTAGCGGTAACGTTCGCAAAACTCAGCCGttattttctcttaatacatccatggttattTTAATGCTTTTTACGTTACTTTAGTATCCTGCATTATGAACGTATCTGTGAAAGAATTGTTTTATTGCACAACGTAACgaatagcttcttttttttttttactgttaaaGCCTGTTGAATTCCTTCATAGTAAAAGTTACAGTGTGCTAAAATGCCTACTGAGTTAAAACAGAGGAAGAAGTCACAAAAACAAAGCGATGAAGTGTCCGAAACGTCGGCTGTAAATGGCAAAGATGAAGCGCAGAAAGGGAAGACAGAAGCTGGAAACAACGCAGGAGCGAATAAAACCTCTTCGAGTTTGGATATTAGAAGTATAATGTGCTTATTGTCGCTTGCAGCATGCGGGGCTCTGAGTTGGGTGGTGCTACAGCAAAATGAAAGGTTTTCCGAAATTGAAGAAAAGTACAAGTCATTACACGGAAAGACTTCAAGTCTCTTCGACATGGAGGAAGAAGTCCTAAAGGTTTCTAAAAAGTGTGAGAGCGTCCAGCTGATGCTGGAGGGTCTCGGGGGTCAGCGGGGGGCTCTGCGGCCCCAGCTGGAGGGTCTGGAGCAGGACGTGAGCCGGCTGAAGGAGTGGGCCTCTGGGCTGAATGAGAAACGAGCTCAGCTTCAGACCAGCCTGACCTCACTGAGAGACGCTGTGGGACAGATCGAAGGGCGCACCTCAGCCATCGCAAAAGACTTAGCCAACAAGGTGGCGTCAGTGAGGACAGATGTGCGCAGGATGGACGGCCTGCAGTCTGAGCTGGAGTCTCTGCTGACTCAGCTGGCGGCGCTGGACGACAAGACCACGCAGGTGGAGCAAAGCATGGTCAAACGCATCGGGGACGTGCTGGTCAGCAGCATTGACCGGGTCTCAAATCTCCGCGCCGTGTCCGAACGCAACACTGAGGCCATAGAGCAGCTCCGCAGGCGCATCCCTGAACTCACCGCCGCTGACAAACAGATCTCGGAGCGCTTGAGAGAGCTAGAGAGCGGCAGAGCTCGTCTGATAAGAACAGTGACTTTTGCCAGCGACCTTAAACCAAAAGTTGCTGCTATTAAGAGGGACTTTGGGGCGTTTGAGCCTCAGCTGTCAGACCTGACTCTGCGGATAGGAAGACTAGCAGAGGATCTTAtgaagagagagcaggaggttGCTGAGCTTAGACAGACACTGGCTAACCTCACTGCAGTAGAGGGAGATTTAAGTGTTACAACTAAACAGGTCAGTGAAATAGCTGACATGTCTGATATTGGAGAGATGCACCGGCCAACATGAGGAACACACTTCTTCAACAACCTCCAGATCAAGGTTTTCTTCTTTTGGATTTTTCTCAGCAATTACATCTGTCATACTACTGTTTAAAGattttactgaaataaatcttttcattacaaattaaataaatgaaaccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638107.1 lncRNA upstream 298441 9934175 ~ 9936593 (+) True LOC120553125
TU307795 lncRNA upstream 366949 9867575 ~ 9868085 (+) True G226930
TU307786 lncRNA upstream 408509 9796473 ~ 9826525 (+) True G226921
TU307787 lncRNA upstream 428432 9806242 ~ 9806602 (+) True G226922
TU307781 lncRNA upstream 480918 9751944 ~ 9754116 (+) True G226918
TU308026 lncRNA downstream 296691 10538196 ~ 10538689 (+) True G227088
TU308047 lncRNA downstream 383941 10625446 ~ 10627982 (+) True G227107
TU308048 lncRNA downstream 387303 10628808 ~ 10630212 (+) True G227108
TU308058 lncRNA downstream 424204 10665709 ~ 10667280 (+) True G227116
TU308091 lncRNA downstream 464405 10705910 ~ 10709545 (+) True G227139
XM_039792107.1 mRNA upstream 378 10226629 ~ 10234656 (+) True arfgap3
XM_039792106.1 mRNA upstream 2587 10226629 ~ 10232447 (+) False arfgap3
XM_039791715.1 mRNA upstream 9132 10200774 ~ 10225902 (+) True pacsin2
XM_039792426.1 mRNA downstream 8253 10249758 ~ 10284100 (+) True uhrf1bp1l
XM_039791996.1 mRNA downstream 46972 10288477 ~ 10522237 (+) True anks1b
XM_039791997.1 mRNA downstream 47521 10289026 ~ 10522237 (+) False anks1b
XM_039791998.1 mRNA downstream 107642 10349147 ~ 10522237 (+) False anks1b
XM_039792000.1 mRNA downstream 108458 10349963 ~ 10522237 (+) False anks1b
unassigned_transcript_1483 other upstream 39828 10195120 ~ 10195206 (+) True trnay-gua_59
unassigned_transcript_1482 other upstream 40518 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1481 other upstream 42622 10192326 ~ 10192412 (+) True trnay-gua_57
TU307644 other upstream 993685 9237264 ~ 9241349 (+) False ndufb2
XR_005638164.1 other upstream 1061814 9134594 ~ 9173220 (+) True lhfpl3
TU308063 other downstream 455749 10697254 ~ 10699718 (+) True G227121
TU308097 other downstream 490564 10732069 ~ 10737503 (+) True G227141
XR_005638076.1 other downstream 706780 10948285 ~ 10986201 (+) False impdh1b
TU308205 other downstream 861331 11102836 ~ 11112905 (+) False G227216
TU308207 other downstream 861331 11102836 ~ 11112905 (+) False G227216

Expression Profile