RNA id: XM_039792440.1


Basic Information

Item Value
RNA id XM_039792440.1
length 7418
RNA type mRNA
GC content 0.50
exon number 44
gene id LOC120553744
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18862872 ~ 18889356 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGCAGTTCCTCCTGGTTTCACAGCGAGAGCATCAGGCAGCATGACCTCACAGCGATGGATGCTGGCATTCTGCTTTTCACTGGCCTCAGTTTTAAGCCCAGGGGAATCGGTGACAACATCAGAAGCTAAGAAATACACTTGCAGGACATTTGGCAGCGGGGTCGTCCAGCCTTTCAGCGGTTCAAGTTTCTATGTTCGCTCCAACTGCCCATTCACCCTAACCCGTTTCACCCACAACCGGGTGGAATGTGATATCACCACACGGCGTGGTGACAACGGGCTGCTGGTCCATGTTGAGATCATAATCAACAAAGTCAGGACTGTTGTGCAGAATGGGAGCATCCTGGTGGAGAAGAAAAGTGTTTCCCTTCCATACGACCACACCTACCAGCACATCTTTCACTACGGCATCTACACTAAACTGAAGAGCTTGCtgctccctctgtctgtcaccTGGCACAATGTACCGGGAGGAATAGACTCTTTGCGGGTGGAGCTAGAGCAGGAGCTGAGCACCGACATGACTGGACTGTGTGGAAACAACGTCCCAGGTGACAAGAAGCAGTTGATTAAGGAGAGCGTCCTTCCTGAGGACACATGTCAAACCCGAGATCCTGTGTCCACTCTGAATCCAGTATGCCAGCAGTTTGTTTCCAACACCTTCGAATGTCTGCAAGGCATGGCACCTCAATATAATACCCTCTGTGAAGAGAACATTTACGGCTATGAAATGAGCAAATACATCGGCTGTGCTTTCTTCAGTGAAGTTGTCCAACAGTGTGGAAACAACAGCTACATCTGGAATATATGGAGAAGTTTAACCAAATGTGCGGAACCAAGTTGTTCAGGAGACCTGGTTTATGTGGAACAGGGCGCGGCCTTTGTTCCCAGCTGCTCAAATCCAAACCCTGGATTCTCCAAACAAGAACTCACCAGCTCCTGTGTCTGCCCAGAGGGCAAGGTGCTTAATGATCACGCAGATGGCTTcagctgtgtgagtgtgtccagCTGCCCCTGTGTCTTTGCTGGTAGGAGATACTCACCCGGAGACGTGCGCACATCCAAGTGTCAGTCATGTATGTGTGACAGTGGGAAATGGAAATGCTCTGAAAACAACTGCCCCACCAGATGTCTCATTGAAGGGCAGTTTGTGAGAACATTTGATGGCAAACAATATGCCCTCCCCGGTAAATGTACATATGTGGCTTCACAGGGTCTCAACTGGACGATAACAATCAAATTTTCTGATAAGGCACCCTTTCTGGAAACAGTCACTCTTCTGCTTTCTCAGGTACAAGACATGTATATGTTTTCAGACAACATGGTTAAATTCGGAGAGGAGAAGATCACTGAACTTCATCAGTCTgATCACGCTCTGGTTTTCTGGCAGTCCTCCATGTATGTCCAGGTCCACACATCCTTTGGTATGAAGATCCAAGTCCAGATGTCTCCTGAAATCCAGCTGTACATTACCCCACCCAGAAACCACACAGAGGCGATCTCAGGTCTTTGTGGAAACGACAACAGTGACACCACAGACGACTTCACCACCAGCAGCAGGATCATCGAGAACTCGGCTCAACCTTTTGCTCAGTCCTGGAGTGTGGGTGACTGTCCGGTGAACATACCCACCACCTGCATCAACAAAGACAATGAAATATTTGCTGATGAAAAGTGCTCTGTGTTGAACAACCCAACTGGAGCATTTGCTCCATGCCATGGTTATATCCCAATTGATCACTACCACACGGCTTGCATCCAAAGAACATGTAACTGTGGCAGCAGTCTGACGCAGTGCTTGTGTGTTGCCCTGGGCAGCTATGCCAAAGCCTGTGCCAATCTGGGTGTTGTAATTGGTGACTGGAGGAGAGCCACCAACTGCACATTGAAATGTGAGAAGAACCAAGTATTCTCCTACAACATGCAAGCCTGCAACCACACATGCCGTTCCCTGTCTGGCCCTGACCCTCGCTGTGGGCTGGAAGACGCTCTTGTGGAGGGCTGTGGCTGTCCAGCGGGAACTCACCTGAACCAAGGAGACACCTGTTCCCCAAAGGCAGAGTGCAATTGTCACTACTGCTATGCCACAATGAACTGTGAGAGTGGCTGTTACTGCCCAAAACAGTACGAAGATCACCGTGGAAACTGTGTTTCTCTGCACAACTGCACCTGTGTGTACAGTGGCAAAGTATTCAGTGCAGGACAGCATGTCAAAACCAACTGTAAAACATGTGTCTGTGGTCAGGGTCAGTGGGACTGCAAAGACGAGCCATGTCCTGGGAAGTGTCAAGTTTACGGAAATGGACACTACCAGACCTTTGACTCCAAATGGTACCGCTATGATGGACAATGTCAGTACACACTTGTAGAGGATGACTGTGGAACTAGAAACGGCACCTTCTCTGTCAGAGTGGAGAGTGTCCCCTGCTGTGATGAGGCGCTTACCTGCTCTCGCTCTATCGTCCTCAACCTGCAGGGCAAGGTCACCCTGACACTGAGTGACATGAAGGTGACCAGACGCCATCATGAAGGCTGGACTCTGCAGGACCATTCACTTTACTCCACACACACTGTGGGACTCTACATCATAATCTCAGTGCCAAGCAGAGGGATAACTCTCATCTGGGACAAACACACCCGGATCACCATAGAGCTGCATGAAAACTGGAGGAACAGAGTGTGCGGCCTCTGTGGGAATTTTGACTTCAACGAGATGAATGACCTACAGATAAGTGGCTCAGCAGTGGTGTCCAGTCCCCTGGCATTTGGTAACAGCTGGAAAGCCGCCACACCCCCTTGCTCTGATGTGACCAAAGAGATATTTCCATGTGACCGCAACTCTTACTGCTTAGCCTGGGCCCAGCGGCGCTGTATGATCATTACAGGAGACACATTCAAAGATTGCCACTTAAAAGGGGAGCCACACCCCTACTACAACTCTTTGTGGGGGGCCCCTTAAGAGACCTGTGAGTTTGAAGGAAAGTTTCTGGGCTTCTGCACAGCTGTGGCAGCCTACGCAGAGGCCTGCAGCGACcacaatgtgtgtgtaaaatggaGGACACCTGATTTGTGCCCCGTCTACTGTGACTTCTACAACGAGCAAGGCCAGTGTAGCTGGCACTATGAAGCATGTGGTGAGATGCTAACCTGTGGCAAAGACAACTACATCAATCACAAGTTGGAAGGTTGCTACCCCAGATGTTCAAAAGAAGTGCCATACTATGATGAAAATACTGGTGAATGCACTAAATTGAGGAACTGCACCTGTTATTTTAATGACACTGTCATTCAGCCTGGGGCAGCGGTGATGATACACTCTATAAAGTGCCGCTGTGAAAATGGATCAATAAAATGTCAACCTACCACCACTCCCACCACTACACCTACCACCACTACACCTACCACCACTACATCTACCGACACTACACCTACCACCACTACACCTACCACCACTACATCTACCGACACTACACCTACCACCACTACATCTACCGACACTACATCTACCACCACTCCCACCATTACACCTAGCACCACTACACCTACCACCACTTCCACCACTACTACACCTACCACCACTCCCACCACTACACCTACCACCACTACAGCTACCACCACTACACCTTACATCACTACACCTACCACCACTACCACCACTACACCTTACACCACTACACCTACCACCACTACACCTAGCACCACTACACCTACCACCACTACACCTTACACCACTACACCTACCACCACTACAACTACCACCACTACCACTACTACACCTACCACCACTCCCACCACTACAACTACCGACACTACACCTACCACCACTACACCTAGCACCACTACACCTACCACACACTACCCTAACTAACAACCTACCACCACTACCACTACTACACCTTCCACCCCACCTACCACCACTACACCTACCACCACTACACCTTCCACCACTACACCTACCACCACTACACCTTACACCACTACACCTACCGCCACTACACCTTCCACCACTACACCTACCACCACTACACCTTACACCACTACACCTACCACCACTTCCACCACTACTACACCTACCACCACTCCCACCACTACACCTACCACCACTACACCTTACACCACTACACCTACCACCACTACACCTAGCACCACTACACCTACCACCACTACACCTTACACCACTACCACCACTACACCTACCACCACTACCACTACTACACCTTCCACCACTCCCATCACTACACCTACCACCACTACACCTTACACCACTACACCTACCACCACTACACCTTACACCACTACACCTACCACCACTACCACCACTACACCTTACACCACTACACCCACCACCACTACCACTACTACACCTACCACCACTCCCACCACTACACCTACCACCACTACACctaacaccaccaccactaccactACTACACCTACCACCACTCCCACCACTACACCTACCACCACTACACCTTACACCACTACACCTACCACCACTACCACTACTACACCTACCACCACTCCCACCACTACACCTACCACCACTACACCTTACACCACTACACCTACCACCACTACACCTACCACCACTACACCTTACACCACTACACCTACCACCACTACAACTACCACACTACACCTACCACCACTACACCTACACCACTACACCTACCACCACTCCCACCACTACACCTACCATCACTCCCACCACTACACCTACCATCACTACCACCACTACACCTTCCACCACTACACCTACCACCACTACACCTACCACCACTACACCTACCACCACTACACCTACCACCACTACACCTACACCACTACACCTACCACCACTACCACCACTACACCTTACACCACTACACCTACCACCACTACACCTACCACCACTACCACTACTACACCTACCACCACTCCCACCACTACACCTACCACCACTACACCTACCACCACTACACCTTACACCACTACACCTAGCACCACTACACCTACCACCACTACATCTTACACCACTACACCTACCACCACTACCACCACTACACCTTACACCACTACACCTACCACCACTACCACCACTACACCTTACACCACTACACCTACCACCACTACCACTACTACACCTACCACCACTCCCACCACTACACCTACCACCACTACACCTTACACCACTACACCTACCACCACTACACCTACCACCCCTACAACTACCACCACTACACCTTACACCACTACACCTACCACCACTACACCTACCACCACTATACCTTACACCACTACACCTACCACCACTACACCTTACACCACTACACCTACCACCACTACACCTACCACCACTACACTTACACCCATCACCAACCCTACTCCCACTACAAGCAACCCATCATCCTCTCcacaagtgtgtatgtgtgaagacCTCAAGAAGAAAAAACAGTGGAATTGTGGTGAGACATGGACAGAGGACTGCTTTCATAAAAAGTGTACAGATGGGAAGATAGAGTTGACTTCGGTGGTTTGTCCAAATTCTTCAATTCCAAACTGCCCCAGAGGCCAGCGCACAAGAGTCTCAGATGGATGCTGTGAAACATGGAAGTGTGACTGTCGCTGTGAGCTATATGGAGATCCCCACTACATCTCTTTCCAAGGTGTAACCTTTGATTTCCTGAACGATTGCACCTACATCCTGGTGGAGGAGCAGTCCCCACGTCATAATCTGACCATTGCTGTGGACAACTTCTACTGTGTGCAGGGCCTCCAAGGCTCCTGTGCTAAAGGCATCATCCTGAAATATCAGAACAACATAGCTACACTCAGTATCCTTCCCGATATGTTTAAAGTACAGGCCACTCTGAACAACGTAACCATTGAGCCGCCATATGAGGAGCATGGGTTGAAGTTTGAGACCACGAGGTACATAGTGTCAATCTACATCCCAGAGGTCCGCTCTTATGTCTCCCTCAGTCCGTTTTATACCCTGGTGGTCAGTCTGGCTATGGAGCACTTCCTCAACAACACCCAGGGACAATGTGGTGTATGTGGTGGTGGATCATGCATCCGTAAAGGAGGGCAGATCGAGAAAGACAGCTGCTGTGATAAGACGGCCTCTGACTGGGTGTATGCTGACCCGCTGAAGCCAGCCTGTGCTTCTGCACCAAGGGACATACCTTGTACCTATGTACCCCCTACCCCATCCCCTCCAACCCCCTGCACTGCGAGCAGACTATGCGATCTGCTAGACCACCCAGTCTTTTCAAAGTGCAGCAGGTACATGAATCTGACCGCTAAAAAGAAGAACTGTGAGTTTGATTCATGCAGAAATGGTCCTTGCTCTTCACTAGAACAAGCTGTTGATGAATGCAAGAAGGCTGGTTTCTGTATTGACTGGAGACGACTGACTGATGGAGGCTGTGATGTGACATGTCCAAAAGGATTGGCTTACAGAGAATGTCATAACAAGCTGGATGACTTCTGCGATGGAGGGAGAAAATATCCAGGAGCCTCCCTCGAGAAAAACGAGGCAGGCTGTTTTTGTCCTAGCGGCCTCTTCAGGGCAGGAAATCACTCTGAcatctgtgtgtctgactgtgccTATTGTAAAGGACCACTCGGTGAGCCCAAACTGCCTGGTGAGGTATGGCAGTCCGGCTGTAATATGTGTACATGCAACAACCAGACTCGCACAGAGAAGTGTGTTCCAAAACCTCCTGTGCCTGTTCCCTCCTGTAGCCCCAATGCTGTGCTGGTAAACACCTCTTGCTGTGGTGATCAGATTTGTGTTGAGAAGACGTGCAGTTATCATGGAAAAACATACAAGgTTGGAGACAGATGGACGGATGCTGCCCATCCCTGCATGTCATATAACTGCAGCATAGAGGGTATTCAGACTGAGACTAGAGTCTGTCCCACAGTAGAGTGTCAGGAGGAGGACAGAATTTGGGATGATCAACACTGCTGCTTTACATGTAACCAGAGGTGTGCTCCGAAGGTGACCAGTATCAGTGTTACCGTAGACAACTGTACCACCGTCATGCAGATACCTGTGTGTCAGGGCCAATGTGTGTCTCAGCCCAGTGTCGTGTTGTTACACAGTGAGCTGCAGGTGGAGCAGAAGTGCGTATGCTGTCAGGAGTCGAGCTCAGAGAAGAGACCAGCGACTCTGCAGTGCTCTGACCGCACGATCAGACCCTACACCTACAAGCACATCACCAGCTGTGAGTGCCGAGCCTGCAGCATACTGGGCTGAAAAGTACTgccagctcagactggaggtATCCTTTAGATTTCCAAATCAAAATCTAATGTATTCAAATTTAATGGATTACTAATCGAAAATCCCTCCAATTGAACAtgcttttttctgtatttaaagCAATTACTACATCTGTTTCCAATCAAATAAACCAAATATGCATACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310196 lncRNA upstream 7558 18850047 ~ 18855314 (+) False LOC120553630
TU310155 lncRNA upstream 123388 18738484 ~ 18739484 (+) True G228622
TU310143 lncRNA upstream 185307 18676351 ~ 18677565 (+) True G228611
TU310137 lncRNA upstream 198900 18604993 ~ 18663972 (+) True G228605
TU310121 lncRNA upstream 328523 18533301 ~ 18534349 (+) True G228593
XR_005638160.1 lncRNA downstream 2818 18892174 ~ 18897527 (+) True LOC120553383
XR_005638159.1 lncRNA downstream 15880 18905236 ~ 18908881 (+) True LOC120553381
TU310389 lncRNA downstream 463648 19353004 ~ 19355518 (+) False LOC120553164
TU310390 lncRNA downstream 463648 19353004 ~ 19354472 (+) False LOC120553164
TU310391 lncRNA downstream 463648 19353004 ~ 19355361 (+) False LOC120553164
XM_039792259.1 mRNA upstream 8232 18822832 ~ 18854640 (+) True LOC120553630
XM_039792255.1 mRNA upstream 8232 18831496 ~ 18854640 (+) False LOC120553630
XM_039792256.1 mRNA upstream 14262 18831496 ~ 18848610 (+) False LOC120553630
XM_039792257.1 mRNA upstream 15009 18831496 ~ 18847863 (+) False LOC120553630
XM_039792260.1 mRNA upstream 124502 18731704 ~ 18738370 (+) True LOC120553631
XM_039792441.1 mRNA downstream 11259 18900615 ~ 18901342 (+) True LOC120553745
XM_039791726.1 mRNA downstream 12194 18901550 ~ 18911762 (+) True LOC120553380
XM_039791724.1 mRNA downstream 25609 18914965 ~ 18927966 (+) True LOC120553378
XM_039791722.1 mRNA downstream 40914 18930270 ~ 18941975 (+) True LOC120553377
XM_039791723.1 mRNA downstream 40914 18930270 ~ 18941975 (+) False LOC120553377
TU310117 other upstream 331704 18530165 ~ 18531168 (+) False srr
unassigned_transcript_1495 other upstream 1272709 17590091 ~ 17590163 (+) True trnak-cuu_15
TU309802 other upstream 1940049 16919663 ~ 16922823 (+) True G228335
XR_005638118.1 other upstream 2031629 16771058 ~ 16831243 (+) False cald1a
TU310402 other downstream 521134 19410490 ~ 19413704 (+) True G228784
unassigned_transcript_1503 other downstream 569727 19459083 ~ 19459154 (+) True trnaq-uug_5
XR_005638131.1 other downstream 742591 19631947 ~ 19808412 (+) False LOC120553210
XR_005638132.1 other downstream 742591 19631947 ~ 19808412 (+) False LOC120553210
TU310593 other downstream 1092892 19982248 ~ 19985648 (+) True G228924

Expression Profile