RNA id: XM_039792447.1


Basic Information

Item Value
RNA id XM_039792447.1
length 1045
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC120553750
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20174451 ~ 20184363 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGCTGTTCCTGGGCAAATCAAGGAGTGGGgaatGACAGTGTTTGCCAAAAGATGGAGTCAGGGATGAACTTTTCTAGACCAGAGATCTCCTCCATCGCTCCCAGTGTGGTGTCTTTCTACGGCAGAAACCATGCAGTGCTGTCTGGTTCTAACCTCAGTGATGTGACCAGAGTGAGGATCCAAGCAGACATGGACTGCACTCCACAAGAATCTCCTGTGTGGAACAACACTGGTGTGAAACTGACGTTCCACATTCCCAGTGCCGATAATAAAGGCGTGGTCAAAGTATGTGTTCTCCTCCCAGACGGTAGTTGCCATGGCAATGCTACAATCACCTACCGGTCATCCCCATCCTGCACCCACATTGTACCAAGCAGCACCTGGATCAGTGGGAAGAGGAATATCACTCTCATGGGATCCCACCTGGAGTTTGTGGAAGGGGTCACGCACAGCCACGCCCCGCAGGAAGTCAGACCTCCTAAGAACAGGAACCATCAGAGTCTCACCTATGACACACCTGCAGCTGAAAAAGATATTTCTACTAGCACTGTGTTTCTGAAAGTAGCCAATGAAACCTTGGCCTGCCTACCAATGACCTACTATCCAGAGCCTGAGTTCACTAGCTTCACATCCACAAGGACAGGGGACGATGTGCACATCATCATACAGAAAAAGGCAGACAAACTGGAGATGACCGTAGCAGAGTTAGAGGTGTGGGGCGTTgaggaagaaaaacaacacCCCTGCATCATGGAAACCAAAGCAACCAGTAATGAGACTGACTTTTTCATCTGTGAGATTAAAAGGACACCTGATGCTACGTTTCAGCACTTAAAAATAAGGTATGGTGACAAGACCGTTACACTCGGACCTCCATCTTTAGTACATCGGGTCCTTACGATACTGCGTTTTCTGCTGATACCCTGTATTATGTCAGTATTGGTGGCTCTCTGTCTATGGCAAAGGAAGCTCACTGCTAAAGCCAACAAGCTGGGACCATCCGCCAAACCTTATGAATGTTTTGCTACTCCATTTTCAAAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638180.1 lncRNA upstream 252597 19921100 ~ 19921854 (+) True LOC120553527
TU310591 lncRNA upstream 258134 19916115 ~ 19916317 (+) True G228922
TU310573 lncRNA upstream 268516 19852928 ~ 19905935 (+) False LOC120553104
TU310649 lncRNA downstream 18978 20203341 ~ 20225185 (+) False LOC120553418
TU310674 lncRNA downstream 114371 20298734 ~ 20301441 (+) True G228989
TU310756 lncRNA downstream 255095 20439458 ~ 20448557 (+) True G229058
TU310762 lncRNA downstream 258304 20442667 ~ 20454788 (+) True G229060
TU310821 lncRNA downstream 378700 20563063 ~ 20565180 (+) True G229108
XM_039792446.1 mRNA upstream 1044 20168859 ~ 20173407 (+) True LOC120553749
XM_039791782.1 mRNA upstream 12412 20124641 ~ 20162039 (+) True LOC120553415
XM_039791788.1 mRNA upstream 126455 19923771 ~ 20047996 (+) True LOC120553417
XM_039791789.1 mRNA upstream 127189 19923771 ~ 20047262 (+) False LOC120553417
XM_039791188.1 mRNA upstream 268499 19882378 ~ 19905952 (+) False LOC120553104
XM_039792448.1 mRNA downstream 719 20185082 ~ 20190908 (+) True LOC120553751
XM_039791790.1 mRNA downstream 6565 20190928 ~ 20203930 (+) True LOC120553418
XM_039792449.1 mRNA downstream 28424 20212787 ~ 20260428 (+) True plxnc1
XM_039791216.1 mRNA downstream 102901 20287264 ~ 20298086 (+) True elk3
XM_039792164.1 mRNA downstream 171253 20355616 ~ 20362518 (+) True LOC120553583
TU310663 other upstream 1052 20147078 ~ 20173399 (+) False LOC120553749
TU310661 other upstream 1052 20170719 ~ 20173399 (+) False LOC120553749
TU310593 other upstream 188803 19982248 ~ 19985648 (+) True G228924
XR_005638131.1 other upstream 366039 19631947 ~ 19808412 (+) False LOC120553210
XR_005638132.1 other upstream 366039 19631947 ~ 19808412 (+) False LOC120553210
TU310736 other downstream 198063 20382426 ~ 20391406 (+) False ucmaa
unassigned_transcript_1504 other downstream 1394950 21579313 ~ 21579423 (+) True trnal-caa_25
unassigned_transcript_1505 other downstream 1395541 21579904 ~ 21580014 (+) True trnal-caa_26
unassigned_transcript_1506 other downstream 1395889 21580252 ~ 21580362 (+) True trnal-caa_27
unassigned_transcript_1507 other downstream 1396134 21580497 ~ 21580607 (+) True trnal-caa_28

Expression Profile