RNA id: XM_039792450.1


Basic Information

Item Value
RNA id XM_039792450.1
length 2701
RNA type mRNA
GC content 0.56
exon number 13
gene id tm7sf3
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21305614 ~ 21326282 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCGTCAGAGCGGCAGAGGGAGAAGGGCTGGCAGTACCGCTCTGCTAAAATCTCTCAGTTCGGTCAAGCATGTCGCTTTTCTGTTTGCAGGGACCTCTACTCTACCCAAATACAATGATTATACTGACCGGTAGATAGAAGCGTTTTGTTGAAGCCGAGGAAATGTCTCGTTGGATTTGGTGCCcgtttctgctgctgctgctgctgcttccccTGGGTTGTGAAGTCCAAGCTCAAGTAGAAAACCGGGTGGTTTTCCTGCCGGGAGCGTTCCAGAACGTGAGCATCTCCCAGAATGAGACGGTGCAGGCCGTGGTGTCCCGGATCCCCCCGGAGGTCGCTTTCATCACTCTGCAGTTCCACACGCAGCACCGCAACGCCACGCTCTCCTACGCCCGGATGCCAGGCCTGGGTCTCTCCCTGACTGCAGTGGACTCGGGGCTCCTGTCGGCTCTGCAGCCAGGCCAAGCGTCCCTCTCCCTGTTTCTGTCTTCTCCTGACGGGGGCACCGTGGCAGGCACCGGGGTCATCCTCCAGTACTCCAGCACCgaTCCGGTCCCTGGAGCTTGCAACATGGAGTTCAACCTGGACATCGACCCAAACGTCTACATCCACTACAACCTCTACGAGACCACGATCCGCTTTGCACCGGCGAACCTAGGATACGAGAGGGGAGAAACTCCGCTGGCCTGCGACAAATCGACAGAAAGCACCACGCGCTGGCGGCTGCAGTATGACATCTACCAGTATTTCCTGCCGGAGAACGACCTATCAGAGCGCAGCCTGTTCAATGGCATTCACGCTGTGGCTGACGTCCAGGGCATGATGGAGAACGGCAAACGGGTCTTGACGGTGTTATCATCAGATATGAGCATGGCCGTGTTCAACTCCATCCCCGGTCAGGGCGTCATCTTCTCAGTGGTGGTCAGAGACCCGCTGCTGAACACCTCGGCCTCCTACGTCCCCGCCCACACCTACGCCTGCAGCTTCACCTCCACCCTGGACGGCTGTCAAACACTCGgAAAGATATCTACCAAGTTTTTCttcacggggggggggggggggggggCCCTAGTGGCGAGCCTCCGGGTCATGTTTGACTCCCATGATGGCTCCATGCGCCACAaagcaactctcataggaatgaacgGGGCTCAGCCTCCAACGCTGTATCCAGAGTTGTTCTGCATGGGATTTAGCTTTGCGacgtttttcttctttgtgCTGATCACAAGGACCACAGGACTGGACTATGACATCTGTCTGACCCTGTCGGCAGTGATCGGCGTGGTGGGCGGCGTCCTCCTGGTGATGAGCTGGTGGCGCTTCGGTTCGGTCATGGCCTGCATCGTCGTGGTTGGACTGATGCTTGGCTTCCTCATCGCCTCCACCGTCCTCTTCACTCCTCTTGGTGACCTGGATTTGTTCAGGCGTTCAGACGCGGTTTTCTGGGTGACGTTCTGCTGCATAATGCTCATTGTTCCGCTCTTCTTCGTGCGCTGGCCCAGAGAGGGCAACATCGTGACGTGCGGCATCGTCGGGGCGTACGCCGTCATCCTGGCCGTCAACGCCTACGTTTACACCAGCCTGTCCTACATCACGCTCAACATCCTCAAGCGCTTCCTCAACAACAACTTCAGCGCCGCGTTCACTGACGTGCCCTTCCAAGCCATCGACTACGTCCTGATCACGGTGTGGGTGGTGCTGGGCGTGTGCGGCATCGTGCTGCAGCTGTACCGCGAGCGCTCCCGCCCGTTCTTCCCGCCCAGCCCGTACCTCATGTGGCTGCAGGAACGCGAGCGCCGCAAGACCAACGTGCTGGACCCGAGCCACCACTTCCCGCCGCTGGCCAACCGCCTCCTGGCCCGTGCGCGCCAGCTCACCAAGAGGATGGAGCCGGCCGGAGAACACACGCCTCTGCTCCTGTGAAGCGCCCACGCACGCCATCGCCGTCTAAAAGGCCCATTCAGGGTTCAAAGTTAGCGCCATCTACCGGCCAAATGCTGGGGCTGGTACATCTGCTTCACAAACAATGGCAGCCTGTTGAGTGGCTGGTCAAATCTAAACATTCACTCgcccatttggctggtagacgaaaaaactttatttttgaaCCCCTGGTACACAGGCCTGAACACACGGAGGGAAAGATCCCTGCGGTCCCGGGGAGACCTCTTAGTGATCTGGAGGAAAAACTGTCCCTCGTGACAGTCGTGACTCAGCACCAAGCGGGATCTAAAGCACTGACACTCTTTACAAAATGTATACAAAGACTGTGACCTTTTCTTTCCCCCTGAACGCCACTTTTATTTAACTCTTAAATGACATTTTAACAAACCACTGAAACTGTTCAAGAAGAACTGAAGAATTCTCTTTGGAATGTCTCAAATGTAGCCGCTGATGCGTTTTATGGCGTCCGCTGCTTCTTGCACTAAAGGCCCAAACTACTAACGGTTAACAAAAGCTGCGCGGCATTTCACCGGTGCCGTCAAAGCAACAAGGCATCTGACGTCGGCTTTTTGTCGTCGCTCAGCTGGCTTCTAAAACTACGGGCGTCCGCTCGGAACGGGACGTTTGTTGTCATTTGGCTTTCAAAGGTGCTCTTAAgcgatgtgacgcgtttttttttttttaggctacgacatttttgttgttgtcacatacagcaaacatctcctcgctatccgctagctgcctgtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311019 lncRNA upstream 34503 21265412 ~ 21271111 (+) True G229264
TU311018 lncRNA upstream 40915 21264396 ~ 21264699 (+) True G229263
TU310977 lncRNA upstream 84802 21220448 ~ 21220812 (+) True G229233
TU310964 lncRNA upstream 155333 21148293 ~ 21150281 (+) False LOC120553023
TU310941 lncRNA upstream 243179 21037948 ~ 21062435 (+) True G229205
TU311091 lncRNA downstream 102021 21428303 ~ 21429238 (+) False arid2
TU311140 lncRNA downstream 177362 21503644 ~ 21613229 (+) False G229352
TU311145 lncRNA downstream 177362 21503644 ~ 21522423 (+) False G229352
TU311136 lncRNA downstream 188568 21514850 ~ 21577189 (+) False G229352
TU311134 lncRNA downstream 188581 21514863 ~ 21524716 (+) True G229352
XM_039791879.1 mRNA upstream 692 21301420 ~ 21304922 (+) True fgfr1op2
XM_039791076.1 mRNA upstream 86388 21183886 ~ 21219226 (+) True zgc:162331
XM_039791075.1 mRNA upstream 86388 21198506 ~ 21219226 (+) False zgc:162331
XM_039791078.1 mRNA upstream 86388 21198506 ~ 21219226 (+) False zgc:162331
XM_039791072.1 mRNA upstream 155263 21148267 ~ 21150351 (+) True LOC120553023
XM_039791778.1 mRNA downstream 50590 21376872 ~ 21428732 (+) True arid2
XM_039791832.1 mRNA downstream 107299 21433581 ~ 21452526 (+) False scaf11
XM_039791828.1 mRNA downstream 107300 21433582 ~ 21452526 (+) True scaf11
XM_039791831.1 mRNA downstream 107300 21433582 ~ 21452526 (+) False scaf11
XM_039791830.1 mRNA downstream 107300 21433582 ~ 21452526 (+) False scaf11
TU310736 other upstream 914208 20382426 ~ 20391406 (+) False ucmaa
TU310663 other upstream 1132215 20147078 ~ 20173399 (+) False LOC120553749
TU310661 other upstream 1132215 20170719 ~ 20173399 (+) False LOC120553749
TU310593 other upstream 1319966 19982248 ~ 19985648 (+) True G228924
XR_005638132.1 other upstream 1497202 19631947 ~ 19808412 (+) False LOC120553210
unassigned_transcript_1504 other downstream 253031 21579313 ~ 21579423 (+) True trnal-caa_25
unassigned_transcript_1505 other downstream 253622 21579904 ~ 21580014 (+) True trnal-caa_26
unassigned_transcript_1506 other downstream 253970 21580252 ~ 21580362 (+) True trnal-caa_27
unassigned_transcript_1507 other downstream 254215 21580497 ~ 21580607 (+) True trnal-caa_28
unassigned_transcript_1508 other downstream 254460 21580742 ~ 21580852 (+) True trnal-caa_29

Expression Profile