RNA id: XM_039792452.1


Basic Information

Item Value
RNA id XM_039792452.1
length 1615
RNA type mRNA
GC content 0.48
exon number 4
gene id nopchap1
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24566241 ~ 24571321 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTGCAGAGCGCAAGCGCAGGCACCTtggtgttatttagttatttttatcATAAAAATCTTTGGTTCGTTACTTTTTCTGATAGCTTCCGTAAACATGAGGAGTTGTAACGATGTTTTAATGGTCTGGTTGTTTATTAGCGTTAATGTTCGTTGTCTGTGCGATTTTACAGCCAACTTCACACAGTCTAATTTCGTGAAGTCTTCCGAAACAGGAGAGGGTGCTATGTTTATTTTCTTGCCATCCACAACGGAAACCACCCGGATGTTGCTTTTAGTAGttagctaatacatccatgagtgaGACACATGTCGACACAAACGTTGCCTCTAAAATGGAATTAAACGTCAAGAAAACGAGTTCAAAGGCGTTGCTTTCATGTGGGAACGGACAAGGTCTCAGTGAGAAGCTTCTCCTCAAGCCAAAGGCTGGCAGACCCCCGCAGACGGAGAGAGTCCCGAGGAGCAGCGtgttgGAGCGGCTGCAGAGCTTCCTGCCTCAGATGGCCGCGGCCAATGAGAAGCTGAAGCAGCAGATGGACGAGGCTCCGGCTGGACGCTTCGACATCGAGAGCGTGGAGGGGGCCGAGAAGGTCATAGAGATGGACGTAGCGCTGGTGGAGCTCAGCGGGTCCGACAGCGACTCAGAAGATGGAGAGGAGACGTCGGAGGAGGACTCCGGCGAGGAGAGCGACGTCACAGAGCAGAACCTTAAACTACCGGGAGACAACGGCAAGAGGAAGAAAGCCTTCATCCAGGTTCTCCATCCACCGGGAGAGTAGAGAAGGTGGCGCCACAGACTTTTTGGCTGCGTGTTGAGTTCCTTTTCCGCATGAGGTGATGCGGGTTTAAACTGACCAGGGACAAAAACCTCTGCCTGCCTCAGGCGTGGAGTGATTTCAACCTacttcacagacacagagacagagaacagGAAGACACAGATCTTCCTCCTCTCATCCCTATGGGAACAAATATCATTTTGTACATTTAAGGCTCACAGCTGCAAAAGTGCCTTTGGAGCCAGAACAGATGCTCTGATTACCTCATCAGCTGACCTCTGAGTGGACATAATgtgcagggtttcccccagaaaagccCGAtggcaagtgtttttttttcgtcAAGGGCCCGGCTGGGGCCGGTcccagactgatggcagcattaatgtagagcccaataacagaatcatggacgGAATCGGGACATTGTGAGTTTTAAAAAGCTAATGGCTCTAAAGGCTCTACATtgagtcagtgctaaaagctaactggagattcaAAAATATGACTGTGTCTAAGTTTCCAACCGAGCCGCCCCACTGCaactgttgttaaaaaaaaaaaaacacacacacacccagtggCTAAGGCCTGGTGGGGGGCAATTTATGCCCGGTGGGCCACCTGGTTTacaatacactgggggaaaccctgatgTGTTTAGGCGTAATACTCGCCTTGTTTGTTGGCCTCTGTTCATAGTTTCATCAGTTTAGGCCGCAACGTATTGTGTATTGTGCTTTCATGAAGCACAGTTGGGATCTTCTCAAGGAAGATAGattaccagattttttttttttacatggcaATCCAAATAAAGCCTCTGTGCACAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312111 lncRNA upstream 80724 24482310 ~ 24485517 (+) True G230109
TU311993 lncRNA upstream 302176 24260059 ~ 24264065 (+) True G230011
TU311974 lncRNA upstream 450120 24112965 ~ 24116121 (+) True G229994
XR_005638178.1 lncRNA upstream 471076 24088025 ~ 24095165 (+) True LOC120553514
TU311959 lncRNA upstream 471076 24088025 ~ 24095165 (+) False LOC120553514
TU312222 lncRNA downstream 224632 24795953 ~ 24798741 (+) True G230192
TU312293 lncRNA downstream 613491 25184812 ~ 25191943 (+) True G230249
TU312317 lncRNA downstream 780556 25351877 ~ 25352174 (+) True G230260
TU312312 lncRNA downstream 791578 25362899 ~ 25373424 (+) False LOC120553523
TU312316 lncRNA downstream 805026 25376347 ~ 25377601 (+) True G230259
XM_039792239.1 mRNA upstream 87478 24384898 ~ 24478763 (+) True chst11
XM_039792240.1 mRNA upstream 87478 24384898 ~ 24478763 (+) False chst11
XM_039791874.1 mRNA upstream 200892 24320276 ~ 24365349 (+) True LOC120553464
XM_039791160.1 mRNA upstream 251534 24309542 ~ 24314707 (+) True LOC120553083
XM_039792460.1 mRNA upstream 257797 24301765 ~ 24308444 (+) True ift46
XM_039791095.1 mRNA downstream 26029 24597350 ~ 24604947 (+) True LOC120553040
XM_039791728.1 mRNA downstream 49544 24620865 ~ 24635265 (+) True LOC120553385
XM_039791731.1 mRNA downstream 160875 24732196 ~ 24749828 (+) True LOC120553387
XM_039791730.1 mRNA downstream 202180 24773501 ~ 24788753 (+) True LOC120553386
XM_039791230.1 mRNA downstream 258877 24830198 ~ 24835745 (+) True LOC120553142
TU312075 other upstream 253303 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 678817 23887337 ~ 23887424 (+) True trnay-gua_62
TU311874 other upstream 717617 23833031 ~ 23848624 (+) False adm2a
TU312157 other downstream 49491 24620812 ~ 24778258 (+) True G230148
TU312620 other downstream 1466966 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 1801415 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 1801415 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 2497756 27069077 ~ 27072552 (+) False LOC120553194

Expression Profile