RNA id: XM_039792456.1


Basic Information

Item Value
RNA id XM_039792456.1
length 2327
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC120553760
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 11812027 ~ 11822653 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGGTGGAGTCCAGATCCACTCCATACCAGTTGGTATTAATGCACAATAATATTGTTTGCCAACAGCcataaaacatcaaaaagaagagaaagaagacgaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagacgATATGGCGACTGCCAGCTGTCTGCTGTCAGAGGAGAAGTTCctgtgttctgtctgtctggatgtgttcactgaGCCAGTCTCAACGCCCTGTGGACACAATTTCTGTAGTGCATGTATTCATACGTATTGGGACGGGTGTGACATTTACCAGTGTCCTTTATGCAAAACGCCATTTTCTCCAAGACCTGAACTCCAAGTCAACACTGTCATGTCTGAGTTAGCTGCTGAGTTTAAGACATTAGTTCGAATCAAAGCCTCAACTCCAGACCCACATCTCCCTGGATCAGCAGACGTTCTTTGTGACATCTGCTCTGAGATGAAGCTAAATGCTGTTAAATCTTGCCAGACGTGTCTAGTGTCTTTCTGTGAAATGCACCTTGAGCCACATCATAGAGTTGCTGCTCTCAAGGGCCACACATTATTAGACCCTGTGAAGAATCTTGATGACAGAATGTGCAAGACGCACAACAAGACAACAGAACTGTACTGCAGGACTGAGCAggcctgtatctgtgtctcgtGTTTCAAAACCGATCACAAGAGTCACAACGTTGTCCCACTTGAGGAAGAATATGAAGCAATGATGGCAAGAAAAGATGAGACCATGGCAAATATCCAACAGACCATACAATCACGGTCCAAGAAAATAGCTGAGATTGAAAACTCTGTTGACGTCAGCCAAAGAGAagctgagaaagagaaagaaaccagTGAGCAGGTCTTCACTGACTTGATCCGCTCCCTCCAGAGAAGCCAGGCCGAGCTTGCTGAGGTGATTGAGGAGAGGTACAGAGCAACAAAGCAAAAGGCTGAAGGTTTTCTCACAGAACTGAGGATGGAGATCGCTGAGCTCGAGAGCAGAAGCACCCAGCTGGAGCAGCTGTCACGTTCTGAGGATCACCACCATTTTCTCCAGAGCTTCCCAACCTTGTGCTCCCCTTTAAACAAGGACTGGGCCAAGATTGGTGTTCACAGCGATCTGTCTTTCAAGGCAGTGAAAGGAGCTATGACGCAGCTGAAACAGAAAGTTGATGAAATAATGGAAGAGCTTCCTgagatcaaaatgaaaaaaatgagagAACATGCAGTGgacttgacctttgaccctgacACAGCATTTTGCTCACTTGTCATAAGCCAGGATGGAAAACAGGTGAAAGATGTAGACACGGAACAGAATCTTCCCGACAGCCCAAAGAGATTTAAAGTGTTTTCAGATATTTTGGCAAAGGAGGGATTCACAACAGGGAAGTTTTACTATGAAGTGCAAGTGAAAGGAAATACTGACTGGATTCTTGGAGTGGTCAAAGAGTCTGTTGATAGAAAGGAGGAAATAGCTCTGTCAGTTAAAAATGGTTACTGGACCATTGGGCTTGATGACAGTATATATTATGCATACACAAAAGCAAGTGTTAAAATCACACTAAAAGAAAAGCTTGAGAAGGTGGGCGTCTTTGTGGACTATATTAAGGGAGTGGTTTCTTTCTACAATGTGAATTCTAAATCAAATATCTATTCTTTCACTGGCTGCCACTTTACAGAGAAACTGTATCCATACTTCTGCACTCAAGGCAACACAAATGGAACAAACTCTGCCCCGATCATCATAACCCCTGTTCCTCAAACACACTGAGTTTGTTCTTTCTTTAAAAACCACGGAAAAATGAACATTGGTCTCTTTTTACACACTTAacaggggtccgtttcagaaaaCGGGTTTAGTGAAAACTAAATGTTATATTGGTAATCTACTGATCTCTTTATCTACAGGTTCTactttactgtaaatgtgtaaatgtaaacTACTGATTCTAATGTTACACAGTAATGTTGTCAGATCTTGTAGTATAATGGGGATATAATTTAATGTTACTTTAATAAGACAAAACAAAGCATGCTGTCAGTGATTGTTAAATTGTGATTTTCCTGCAAAATCACATCACACAGATCTCCTTGGCCCTTTGAATCCAGCCATACTGTTTATAGCCACTACCCTGACTACGATTTATCAGATGGAAAATTACAGAAAGGGACAGTACTGGGAAGACCAGTGTGTACGCAGTCTTCATTTTGCTTTGTTCTTGTAATTTGCAGTGGCTTTGTGCATTTGACAAGTTTGTGTAAATAAACTGCACATTAAGACTGA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308264 lncRNA upstream 184084 11624235 ~ 11627943 (+) True G227267
TU308248 lncRNA upstream 351527 11460113 ~ 11460500 (+) True G227251
TU308216 lncRNA upstream 624245 11186939 ~ 11187782 (+) True G227221
TU308210 lncRNA upstream 699122 11102836 ~ 11112905 (+) True G227216
TU308211 lncRNA upstream 699122 11102836 ~ 11112905 (+) False G227216
TU308377 lncRNA downstream 167447 11990100 ~ 11992952 (+) True G227338
TU308405 lncRNA downstream 420881 12243534 ~ 12243755 (+) True G227363
TU308581 lncRNA downstream 1024161 12846814 ~ 12910140 (+) False plxna4
TU308594 lncRNA downstream 1165060 12987713 ~ 13043018 (+) True G227499
TU308615 lncRNA downstream 1248892 13071545 ~ 13075348 (+) True G227510
XM_039791007.1 mRNA upstream 355435 11453460 ~ 11456592 (+) True pax4
XM_039791244.1 mRNA upstream 444072 11362763 ~ 11367955 (+) True lrrc4.1
XM_039791047.1 mRNA upstream 788269 11019226 ~ 11023758 (+) True LOC120553009
XM_039791057.1 mRNA upstream 825826 10951264 ~ 10986201 (+) False impdh1b
XM_039791458.1 mRNA downstream 3656 11826309 ~ 11836976 (+) True LOC120553244
XM_039791459.1 mRNA downstream 3658 11826311 ~ 11836525 (+) False LOC120553244
XM_039791457.1 mRNA downstream 30027 11852680 ~ 11864699 (+) True mettl25
XM_039791449.1 mRNA downstream 49894 11872547 ~ 11929466 (+) True tmtc2a
XM_039791455.1 mRNA downstream 119212 11941865 ~ 11957172 (+) True LOC120553241
TU308276 other upstream 54710 11689169 ~ 11757317 (+) True G227278
TU308205 other upstream 699122 11102836 ~ 11112905 (+) False G227216
TU308207 other upstream 699122 11102836 ~ 11112905 (+) False G227216
XR_005638076.1 other upstream 825826 10948285 ~ 10986201 (+) False impdh1b
TU308097 other upstream 1074524 10732069 ~ 10737503 (+) True G227141
TU308397 other downstream 298219 12120872 ~ 12126545 (+) False st8sia1
XR_005638103.1 other downstream 1182686 13005339 ~ 13020260 (+) False nrf1
TU308693 other downstream 1652492 13475145 ~ 13479027 (+) False yeats4
TU308903 other downstream 1852171 13674824 ~ 13685881 (+) False LOC120553473
unassigned_transcript_1486 other downstream 1946402 13769055 ~ 13769127 (+) True trnak-cuu_11

Expression Profile