RNA id: XM_039792461.1


Basic Information

Item Value
RNA id XM_039792461.1
length 1484
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC120553766
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 28126586 ~ 28132212 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTTTTCTTACACTCCCTACCCAAATGATGCACAGCGGTGTGAAGTAGTAGAGGCTCTCATAAAACGGCATCCATGTTTGAAGGAGCCAGGCTCTTTCAATGGTCTGTATGGATGGCAACAGAGCCTGAAGTACAAAATAGGAAATTACCGAAGCAAACTTCGAACGCATGGGATTCCAGAACTATTGGTTAACTCTCTACAGCACAAATCTCCTGGAGACAAGAAACCAGCCAAGAACGTAAAAAAACCAAGAAAATCCGAGGTGAACTACCTTCCCCCTCTTCCTGCAGGGGAAACAGAAGATTCCCTTGAGAGTGTCAGGCAGGAACTGATATCTGAGGCTAAGAAAAAGAATAATGGCAGAGTTATAAATGAGATGATGTCCAGAACCTTTAGTTTCCGAAGACAGGAGATTGTAGGCAAAGCCCCGGGTGTTGCAGATCTGCTAGAGAGATGGCCTGCCCTCTTTGAACCATCCCAGATCAATGAAGAGTTTCGGAGAATCAATGGCATATCACTTGAGCCGACATTCATGTCACAGTTGGACAAACGCACTCCAAAGATGTTGTCACTTTTCAATTCAAAGGGCGGAGCTGTCGGTCAAAGAATCAAGTCCCAGATGTTGGAACTCATCCAGGATCCATCTGCCTCTGAGGAGAAAAGACGAGAGGTGATTCTGAGATGTCTGACTGAGTACATGGGGGAGAGCCAAGAACAACTGATCAGTGAACACCACAGTTGTGATGAAACCGAGGTGTCCGCTGAACTCAGCGATTGCATAATGAAAGTTTACATGTGCCATCAGCCCAATGCCATTGGCATTGTCATCGAAGGACATCCAGTGGTCAGAGGTCTTAACAACTTGTCACAAGCATGCTGCCTACTGCTTGGACTTACTTATTGCCTGGATATGAAATATCCACCAAAACTGCAGCACACATTTGAGACGTACCAAAGGCTCTTTGTTGGAATAGACCCCATGCGCCCTAAACCATCATCTAAATACACAAGTCTCCTCAACAAGTTGTCTTAGATGACTTCTTGTCACTTATCTCACCTTGGTAGGTGAGACTACACATACTTCAGCATAATAGCATAATGTGAAATGTTCAGGGTGGTATATTTTCTGAAGTTAATATAATCATGCTTAGTTCAACTTGTTCTGTTTCATACTATTTAGTTGATACtattgacatttaaaaagaattCTCTTCACCAAAACTCAATGGCCTTTTCAGTCATATCATTGTTGTGCCTTGAAACTAAATTGACAGGTAACTGTTCAGTTTGTCATGCTACGTGATGAAGTCTTTTGGCAAGTTTTTCAGGTAATAGAATTTCATTGCATTTGTGTTCATTCTAATGTGCCTTAAATGAAAACTGACTTAACTGTTTACTAGTCAATCCCTCATGAGGTAGATACACCTACTGTGTAATTCAGCAGTtctttaaacaattttaaatatTGTTATTGCAATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313182 lncRNA downstream 22647 28103567 ~ 28103939 (-) True G230988
TU313180 lncRNA downstream 37697 28088428 ~ 28088889 (-) True G230986
TU313178 lncRNA downstream 38402 28087672 ~ 28088184 (-) True G230984
TU313171 lncRNA downstream 61757 28064550 ~ 28064829 (-) True G230977
TU313158 lncRNA downstream 102095 28024012 ~ 28024491 (-) True G230965
TU313207 lncRNA upstream 161681 28293893 ~ 28294569 (-) True G231012
TU313238 lncRNA upstream 207908 28340120 ~ 28341022 (-) True G231042
TU313243 lncRNA upstream 249109 28381321 ~ 28381567 (-) True G231047
TU313244 lncRNA upstream 256326 28388538 ~ 28388885 (-) True G231048
TU313239 lncRNA upstream 268745 28400957 ~ 28430526 (-) False LOC120553767
XM_039791036.1 mRNA downstream 89551 28033497 ~ 28037035 (-) True LOC120552998
XM_039791442.1 mRNA downstream 264500 27848579 ~ 27862086 (-) True LOC120553236
XM_039791020.1 mRNA downstream 278423 27798509 ~ 27848163 (-) True tmpoa
XM_039791021.1 mRNA downstream 278424 27798514 ~ 27848162 (-) False tmpoa
XM_039791022.1 mRNA downstream 278426 27798514 ~ 27848160 (-) False tmpoa
XM_039792462.1 mRNA upstream 208870 28341082 ~ 28430522 (-) True LOC120553767
XM_039792464.1 mRNA upstream 432687 28564899 ~ 28566747 (-) True LOC120553769
XM_039792476.1 mRNA upstream 435773 28567985 ~ 28577657 (-) True LOC120553775
XM_039791398.1 mRNA upstream 610310 28742522 ~ 28743502 (-) True LOC120553219
XM_039791218.1 mRNA upstream 745383 28877595 ~ 28879359 (-) True LOC120553130
XR_005638253.1 other downstream 353081 27773303 ~ 27773505 (-) True LOC120553859
XR_005638254.1 other downstream 361994 27764394 ~ 27764592 (-) True LOC120553860
TU312888 other downstream 1007989 27117206 ~ 27118597 (-) True G230730
unassigned_transcript_1529 other downstream 1125463 27001052 ~ 27001123 (-) True trnaw-cca_36
TU312734 other downstream 1745221 26375692 ~ 26381365 (-) True G230594
TU313345 other upstream 612391 28744603 ~ 28745246 (-) True G231126
TU313355 other upstream 659793 28792005 ~ 28792745 (-) True G231136
XR_005638219.1 other upstream 680233 28812445 ~ 28812635 (-) True LOC120553817
XR_005638233.1 other upstream 681721 28813933 ~ 28814120 (-) True LOC120553832
XR_005638228.1 other upstream 688278 28820490 ~ 28820685 (-) True LOC120553827

Expression Profile