RNA id: XM_039792466.1


Basic Information

Item Value
RNA id XM_039792466.1
length 1802
RNA type mRNA
GC content 0.42
exon number 10
gene id nudt5
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20565597 ~ 20570560 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aAATAGTCTACCCCCACTGAAGGCTAAACTCCGGTGACGTTTGCGATCCCAGGAAGTGGCGACAGAGTGACACCTCACTGTTTTTTTCACATCTAttctctactactactactgcagtTCGGTTTTCACTTGGCCACAAATTGAAAATGAGCAACTCCGAAGAACCCAAAGTGACTTGTGCTCCACACATAGTGAAAGAAGAGCTCATGGCAGCAGGAAAGTGGCTGAAGCTGGAGAACACTACGTACGTGGaccgagctggaaaaaccagAACCTGGGAGACCGTGAAAAGGACGACGAGGCAAACCAACACCGAAACAGACGGCGTCGGTGTTATCGCCCTGCTGAAGCGGACCCTCCATAAAGACTGCGTAGTGATGGTGAAGCAGTTTCGTCCTCCTTTGGGATGCCACACTCTGGAGTTTCCTGCAGGGTTGATTGACGAGGGGGAAACTGCAGAGGCTGCTGCACTGAGGGAGCTAAAAGAAGAAACTGGCTACAAAGGGGAGGTAGTTGGAGTCACTCCAGTGACCTGTCTGGACCCCGGTCTGTCTAACTGCACCACCCAGATCATCATGGTCAACATCAACGGAGATGAAGGGGAGAACATCAACCCAAAACAAGAGCTCGGTGATGGAGAATTTGTTGAGGTCATTCTTTTACCACTTGATGAATTCCAGAAGAAAATAGATGATCtgatgaagaaagaaaagatcGTGGTGGATGCTAAAGTGTACATCTTTGCCATGGGGATGGTCCAGGCCTTCTTTAAGCCGAGGGAGCTCCCCGTTCTGAAGCAGTGAAGGAAAACGTTCAGGATGAGAACGAGAGAAGAAGAAATAGTCTTTTATGTTACATAGGGCTCCTACACAGGACTGGAAAATCTGTATTAAAAAGGACATGGAGGACTTCCAAATTGTAATAAGAATttgtatgaaaatgtgttgtTGCATTGTGGGGTTTAGCCACCATGTAACCTCATATTTCAATTTTAGTTTCTATAAAGTATAATGGCCATACATGGAGTAATATGAAAGTTAGAAGACACAGTACAACTTTGTGTGTTAATCATACTGAACACAAACATCAAATTATGAAATCAAagtcttgtaaaaaaaaaaaaaaactttggctttagaaagtgaaCCTATGAAGGAGCCCTGTTTGCACTACATGCACTGGACTACTTTTTGTTCTCAGTACGAAGGCCTGAAACACACTCTGGTGGCCAATTGTTAATTGTTTGCACACTTAACGCAGAGTAGTTTCAGCCTTTAGGTCTCAGAATGCCTTACTTGACAAATAGtattttccaggtttttatgaGATTACATGTAGTTTAATGAGATGCaatttgttgtcatttttattagTGATCGTAAAACATTCCTAACAGTACTGTTGCAGacttgacggcggaaaaaaatCCACCTCCAAACACTTTTCCTGTTGCTCCGTTGCTTCTCTTGCTGAAGTACGATGCAATTCTTTCATTTCGTTTGTTGTGTTCTACTTTTTCACTTAGATAACCCATGCATTGTGATAATAGATACATATAGTATTTGGTTGGGCTATTAACAACAGTGTTAACAATATGATGGGGGGGATTGCCCTGTGTTACTCCCCTGTAATGTACAACAGAGATACTGTCATGATAGAGGCAGTAACTGATTCATAGGAAGTCATCCATGCTGTGCCTCCAACCTCATTATGGTACAGTTAGCTGGACATCGATGCTGTACTTACCCTAGCAACTACAAATTACTGACCAATGAATAAATGTGATACTACTTTTGTTCTTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310821 lncRNA upstream 417 20563063 ~ 20565180 (+) True G229108
TU310762 lncRNA upstream 110809 20442667 ~ 20454788 (+) True G229060
TU310756 lncRNA upstream 117040 20439458 ~ 20448557 (+) True G229058
TU310674 lncRNA upstream 264156 20298734 ~ 20301441 (+) True G228989
TU310649 lncRNA upstream 340412 20203341 ~ 20225185 (+) False LOC120553418
TU310845 lncRNA downstream 36672 20607232 ~ 20607530 (+) True G229130
TU310915 lncRNA downstream 353388 20923948 ~ 20925059 (+) True G229182
TU310941 lncRNA downstream 467388 21037948 ~ 21062435 (+) True G229205
TU310964 lncRNA downstream 577733 21148293 ~ 21150281 (+) False LOC120553023
TU310977 lncRNA downstream 649888 21220448 ~ 21220812 (+) True G229233
XM_039792013.1 mRNA upstream 131049 20422837 ~ 20434548 (+) True ccdc3a
XM_039791158.1 mRNA upstream 174194 20382393 ~ 20391403 (+) True ucmaa
XM_039792163.1 mRNA upstream 189249 20364803 ~ 20376348 (+) True LOC120553582
XM_039792166.1 mRNA upstream 203077 20357331 ~ 20362520 (+) False LOC120553583
XM_039792164.1 mRNA upstream 203079 20355616 ~ 20362518 (+) True LOC120553583
XM_039792465.1 mRNA downstream 428 20570988 ~ 20603179 (+) True fbxo18
XM_039792274.1 mRNA downstream 72347 20642907 ~ 20655914 (+) True rbm17
XM_039792275.1 mRNA downstream 72347 20642907 ~ 20655914 (+) False rbm17
XM_039792492.1 mRNA downstream 107489 20678049 ~ 20689946 (+) True pfkfb3
XM_039792494.1 mRNA downstream 107489 20678049 ~ 20689946 (+) False pfkfb3
TU310736 other upstream 174191 20382426 ~ 20391406 (+) False ucmaa
TU310663 other upstream 392198 20147078 ~ 20173399 (+) False LOC120553749
TU310661 other upstream 392198 20170719 ~ 20173399 (+) False LOC120553749
TU310593 other upstream 579949 19982248 ~ 19985648 (+) True G228924
XR_005638132.1 other upstream 757185 19631947 ~ 19808412 (+) False LOC120553210
unassigned_transcript_1504 other downstream 1008753 21579313 ~ 21579423 (+) True trnal-caa_25
unassigned_transcript_1505 other downstream 1009344 21579904 ~ 21580014 (+) True trnal-caa_26
unassigned_transcript_1506 other downstream 1009692 21580252 ~ 21580362 (+) True trnal-caa_27
unassigned_transcript_1507 other downstream 1009937 21580497 ~ 21580607 (+) True trnal-caa_28
unassigned_transcript_1508 other downstream 1010182 21580742 ~ 21580852 (+) True trnal-caa_29

Expression Profile