RNA id: XM_039792486.1


Basic Information

Item Value
RNA id XM_039792486.1
length 1721
RNA type mRNA
GC content 0.47
exon number 12
gene id mest
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 12308833 ~ 12316118 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGAGACTGCATAGGTGAAACCCATATAACTAAACGTTTGGGGAACCCGGAAGTATCAACAGAGTGAGACGTCTGCGCTTTTTCTCCTTACTACAAACCGTCGTTCCTTTCCGCTCTGCAGGAATTCCTTCTGCAGTATGGACTCTAAACACAGGAAGAAGGtctgctactactactaacgaccatagacagtatatagaagaTAACGACAGATCGCAACATTTCTAGGCAGGAATGAGACTCCCCTACCGCTGAGCTCAAGATGAGAGAGTGGTGGGTTCATGTGGGTTTGATCTGCATCCCGCTGGTGGCCGTCTACCTGCACATCCCGCCCCCTCAGCTGTCCCCTGCCCTGCAAAAGTGGCATAGTGCCGGGGAGGTGTTCCATTTCAGAGGCAGGGAGATCTTCTACAGAGATTCCTATGGGGCTTTGGGAAGCTCCGATGTCGTCATTCTGCTCCATGGCTTCCCCACCTCCAGCTTCGACTGGAACAAGATCTGGGAGCCACTCACTCAGCGCTTCCATCGAGTCATTGCACTGGACTTCCTGGGCTTTGGTTTCAGCGACAAGCCACGACCCCACAGGTACTCCATCTTCGAGCAGGCCAGTGTGGTGGAGGCCCTGGTGGCTCACTTGGGTCTGAGCAACCAGCGAGTGAATCTGGTGTCCCATGACTATGGAGACACTGTGGCCCTGGAGCTGCTCTTCAGGACTGACCAAAACCGCACAGGACACCTCATCATTAACAGCCTGTGTCTTTCTAATGGAGGATTATTCCCAGAAACACATTACCCACGTTTGCTGCAGAAGCTTCTGAAGGACTCTAGTTTTCTGGCTCCAGTTCTGACCCGTCTCACCAACTATATGATCTTCCAAAAAGGGATTGGAGACGTGTTCGGCCCGTACACGCAGCCCACAGACGCTGAGTTCTGGGACATGTGGACGGGTTTACGCTACAACGACGGCAACTTAGTGatggacagTATTCTGCAGTACATCAACCAGAGATTAAAACACAGGGAGCGATGGGTGGGTGTGCTCACTTCCACCTTCGTCCCACTGCACATGATCTACGGACCCCTGGACCCAGTCAACCCTCATCCTCAATTCATCCGTCTTTACCAGCAGCTGGTCCAGAGGTCGACGGTCACCATTTTGGACGAACACATCAGTCACTATCCTCAGCTGGAAGATCCCACTGGCTTCCTCAACGCatatttcaattttattcacTCTTTCTGAAGGGATACCAAATGCAACACCCCGTGTTCATTAATTATTTTCAGACCCTTAACAAGCTGTTTGGTACGTTAGCAACACTTATTCAAGGTGATAAACAGCCACATGAGGTGCAAAGACTTCCCCTGATGAACGTAACCAGGAGTAATGAGATTTATACACGAGTGACGGGATAATTTACCAGCACCAAACCCTAAAGTGTCAATTACTACCCTGGAAGACATCTAATATGAGCTAGAAACATTATTTATTCTACTTAATGCACAGAATCACTAATCTGGTAGTTTATGGACCTTCTTTCAACATGAAAGTTAAAGTTATAGGTTGTGCAATTACTGACTTACTGATTACTGACATCGTTTTGAGTCCTGCAATCAGCTGCATTCTAAATGAATTTTGATGATTTTCTACATTTCTCTTGATGTCAATGAAAAACCTAACTGTCAACTTTTCGTCAAATAAAACTAGTTTTGTATAAAA

Function

GO:

id name namespace
GO:0060119 inner ear receptor cell development biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0048840 otolith development biological_process
GO:0007605 sensory perception of sound biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0048919 posterior lateral line neuromast development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308405 lncRNA upstream 65078 12243534 ~ 12243755 (+) True G227363
TU308377 lncRNA upstream 315881 11990100 ~ 11992952 (+) True G227338
TU308264 lncRNA upstream 680890 11624235 ~ 11627943 (+) True G227267
TU308248 lncRNA upstream 848333 11460113 ~ 11460500 (+) True G227251
TU308216 lncRNA upstream 1121051 11186939 ~ 11187782 (+) True G227221
TU308581 lncRNA downstream 530696 12846814 ~ 12910140 (+) False plxna4
TU308594 lncRNA downstream 671595 12987713 ~ 13043018 (+) True G227499
TU308615 lncRNA downstream 755427 13071545 ~ 13075348 (+) True G227510
TU308813 lncRNA downstream 1177283 13493401 ~ 13493861 (+) True G227639
TU308823 lncRNA downstream 1200364 13516482 ~ 13531547 (+) True G227646
XM_039792479.1 mRNA upstream 4458 12260069 ~ 12304375 (+) True atp2b1a
XM_039792483.1 mRNA upstream 4458 12260069 ~ 12304375 (+) False atp2b1a
XM_039792482.1 mRNA upstream 4458 12260260 ~ 12304375 (+) False atp2b1a
XM_039792484.1 mRNA upstream 7509 12260069 ~ 12301324 (+) False atp2b1a
XM_039791714.1 mRNA upstream 182781 12106952 ~ 12126052 (+) True st8sia1
XM_039791801.1 mRNA downstream 245232 12561350 ~ 12634881 (+) True chchd3a
XM_039791803.1 mRNA downstream 245232 12561350 ~ 12634881 (+) False chchd3a
XM_039791802.1 mRNA downstream 245233 12561351 ~ 12634881 (+) False chchd3a
XM_039791804.1 mRNA downstream 245233 12561351 ~ 12634881 (+) False chchd3a
XM_039791805.1 mRNA downstream 245234 12561352 ~ 12634881 (+) False chchd3a
TU308397 other upstream 182288 12120872 ~ 12126545 (+) False st8sia1
TU308276 other upstream 551516 11689169 ~ 11757317 (+) True G227278
TU308205 other upstream 1195928 11102836 ~ 11112905 (+) False G227216
TU308207 other upstream 1195928 11102836 ~ 11112905 (+) False G227216
XR_005638076.1 other upstream 1322632 10948285 ~ 10986201 (+) False impdh1b
XR_005638103.1 other downstream 689221 13005339 ~ 13020260 (+) False nrf1
TU308693 other downstream 1159027 13475145 ~ 13479027 (+) False yeats4
TU308903 other downstream 1358706 13674824 ~ 13685881 (+) False LOC120553473
unassigned_transcript_1486 other downstream 1452937 13769055 ~ 13769127 (+) True trnak-cuu_11
unassigned_transcript_1487 other downstream 1453948 13770066 ~ 13770177 (+) True trnal-caa_20

Expression Profile