RNA id: XR_005638089.1


Basic Information

Item Value
RNA id XR_005638089.1
length 557
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id LOC120553039
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 22976473 ~ 22994911 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTGTCAGTTTGTTCCTGCCTGTGTTTTGCCCGTCGGTTTGTGCATGTTATCGCCTGCTGCCGTTGCTTTTGATTTCTCCCTGCCTGACTTTTGGTGCCCTACAAGAGGGGACTTAATACGCAAGCACCACGGAGAGAGGGCTCGCGGAGTCCCTAAAGGAGGGGTCGCTCCCAACGGCGAGGACACCGAAGCAAGCAGGCCTGGCTCCGGAGCGTGAATTAAAACAGCGGCATGGTAAAATGACCTCTCAAAGAGAGATGGTGTTGCGTTCATTGGATGCTGAAGCAGTCGGCTCACTCAAAGACGGAGTCAATTTCCAGAAAAACCCAGAAGATGGAAAATGTTACATCATACACAAGACCAGCCATGGCCTTAAAGCATGCAAGAACCAATGCAAACACCAGGGAGGCTTGTTCATCATGGACATTGAAGACCTGAATGGCAGGAATGTAAAATGCACAAAACACAACTGGAAGTTAAATGTGTCAACAATGAAATATGTGACTCCACCTGACAGCATCTTGCAGGACGAGCTGGGTGAGTTCCATTTGTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311500 lncRNA upstream 143312 22832950 ~ 22833161 (+) True G229621
XR_005638125.1 lncRNA upstream 204840 22766101 ~ 22771633 (+) True LOC120553177
TU311420 lncRNA upstream 622085 22354115 ~ 22354388 (+) True G229559
TU311303 lncRNA upstream 650216 22325795 ~ 22326257 (+) True G229494
TU311302 lncRNA upstream 655945 22320266 ~ 22320528 (+) True G229493
TU311539 lncRNA downstream 33928 23028839 ~ 23037327 (+) True G229645
TU311555 lncRNA downstream 109269 23104180 ~ 23186555 (+) True G229659
TU311564 lncRNA downstream 153995 23148906 ~ 23149414 (+) True G229667
TU311565 lncRNA downstream 154999 23149910 ~ 23187772 (+) True G229668
TU311576 lncRNA downstream 183045 23177956 ~ 23178952 (+) True G229672
XM_039791092.1 mRNA upstream 9508 22956704 ~ 22966965 (+) True LOC120553035
XM_039791089.1 mRNA upstream 58896 22892813 ~ 22917577 (+) False LOC120553032
XM_039791088.1 mRNA upstream 58896 22896015 ~ 22917577 (+) True LOC120553032
XM_039792335.1 mRNA upstream 233294 22739717 ~ 22743179 (+) False phlda1
XM_039792334.1 mRNA upstream 235225 22739717 ~ 22741248 (+) False phlda1
XM_039792453.1 mRNA downstream 26504 23021415 ~ 23048594 (+) True LOC120553757
XM_039791992.1 mRNA downstream 197815 23192726 ~ 23206478 (+) True krr1
XM_039791645.1 mRNA downstream 294667 23289578 ~ 23299318 (+) False ccdc107
XM_039791644.1 mRNA downstream 294668 23289579 ~ 23299317 (+) True ccdc107
XM_039791648.1 mRNA downstream 320510 23315421 ~ 23440663 (+) False kcnc2
XR_005638197.1 other upstream 233294 22739717 ~ 22743179 (+) True phlda1
TU311231 other upstream 1108176 21867201 ~ 21868297 (+) True G229428
TU311225 other upstream 1117264 21857983 ~ 21859209 (+) True G229422
TU311228 other upstream 1125872 21849211 ~ 21850601 (+) True G229425
TU311226 other upstream 1129453 21837922 ~ 21847020 (+) True G229423
XR_005638156.1 other downstream 320512 23315423 ~ 23440663 (+) False kcnc2
XR_005638155.1 other downstream 320512 23315423 ~ 23438926 (+) False kcnc2
XR_005638157.1 other downstream 320512 23315423 ~ 23438184 (+) False kcnc2
TU311873 other downstream 838120 23833031 ~ 23848624 (+) True adm2a
TU311874 other downstream 838120 23833031 ~ 23848624 (+) False adm2a

Expression Profile