RNA id: XR_005638093.1


Basic Information

Item Value
RNA id XR_005638093.1
length 1246
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id LOC120553072
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 23969947 ~ 23971613 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCAAGCTTCTCCCAGCATGCTTTTCTGAGCAGCTGATCGGGGTTTACAGTAGGAAGACTGATGAGCAGAGTGTGGATGCTAGACAGAAAGGACTTGGACCAGTGGTGTAAAGATAAGGGCTGGCCAAACCCTCAGTATGGAGACACTGCAACACCGTAAATCATCCCTGGGGGAAATATCCAGAACAACCCACCAGAGGTTATGGAAAATAGAGATTAAAAGTgagaaaagaaagcaaatacTCCCTGCTACTTATTGGTTATAATGATTGAATCTATAAGGTGTATGATCACAGTGTAGTATAGATACCACATTTCTCTCCAAAAACAAATGATTTCAGAGTACCAGGATACATTACTACATGTTTGGGTCATATACTCAGTTTCTTTAGAGCCCTGTTCAACACTGAACACATATCTTTGTTTTAGTTTGATCATTAAACACACTTTACAGTTAATGTCTCACACTCCTTCATGTCTTGGTCTAAACTGAAGCATATTTTAGATCATTGTTTTATATCCGTCACATTTATGCTTCTCTGTGTATTCTGTGTGTATTCCTTATAATCAGGGCACGCTGTAAAGCACTACCCACATGGAGTGGACTTAAAGTGAATATTTAAATTGTGGTTTTGGGCTTTCAAATATTAAGGGGTGTTTGGTTTTTATGTTAATCATGTGCATTGATGTGATCATGATGGATctgattatatattatatggTAAGCTCTGACTTGGGAAGCACTTTGTAGAAGAATCATGATTactattaaaattaaataaaaaattgaattaTTAACATAATGATTACTTTatatcaggggtcttcaacgctttttaagccaaggaccccttaactgaaagagagatggagcagggaccccctaccacatatattgtatgaaaaGAAGTTGCtcattaaactgggcctacaatactGTGTGGGTGGCCTAAAGTCTTTATATATACCTTTTTTGCAAAGAATACTGTATATCACTATTTCTTACTGTATTCATACTATATAGCTTCACTATTTTAATGTAACCATCTGAGTGTGGTGAAGACAAACTTTCGATATCGTTGTGTTTTGCTCATGGAGTGAAAATATGTTAGATTCTTAATATATATTTGGGGCTGTAAAGGGAAACCTACCAAAGTTATTTGAGCCTTTATACTTCATCCCCCACTAAGACATGTTGATGACAGATTGTGCCTGCTctatttgaaataaaatataaaaaatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311919 lncRNA upstream 21409 23947693 ~ 23948538 (+) True G229945
TU311915 lncRNA upstream 24307 23944058 ~ 23945640 (+) False LOC120553686
TU311911 lncRNA upstream 53559 23915811 ~ 23916388 (+) True G229938
TU311778 lncRNA upstream 290639 23667703 ~ 23679308 (+) True G229841
TU311754 lncRNA upstream 384448 23579721 ~ 23585499 (+) False G229821
TU311951 lncRNA downstream 22953 23994566 ~ 23994835 (+) True G229974
TU311953 lncRNA downstream 93601 24065214 ~ 24066989 (+) True G229976
XR_005638178.1 lncRNA downstream 116412 24088025 ~ 24095165 (+) True LOC120553514
TU311959 lncRNA downstream 116412 24088025 ~ 24095165 (+) False LOC120553514
TU311974 lncRNA downstream 141352 24112965 ~ 24116121 (+) True G229994
XM_039792350.1 mRNA upstream 25761 23934300 ~ 23944186 (+) True LOC120553686
XM_039792347.1 mRNA upstream 36071 23924156 ~ 23933876 (+) True asb13a.1
XM_039792348.1 mRNA upstream 36071 23924156 ~ 23933876 (+) False asb13a.1
XM_039792349.1 mRNA upstream 36345 23924156 ~ 23933602 (+) False asb13a.1
XM_039791739.1 mRNA upstream 56134 23899241 ~ 23913813 (+) True gdi2
XM_039792096.1 mRNA downstream 238006 24209619 ~ 24249507 (+) True mkln1
XM_039792097.1 mRNA downstream 238006 24209619 ~ 24248462 (+) False mkln1
XM_039792460.1 mRNA downstream 330152 24301765 ~ 24308444 (+) True ift46
XM_039791160.1 mRNA downstream 337929 24309542 ~ 24314707 (+) True LOC120553083
XM_039791874.1 mRNA downstream 348663 24320276 ~ 24365349 (+) True LOC120553464
unassigned_transcript_1527 other upstream 82523 23887337 ~ 23887424 (+) True trnay-gua_62
TU311873 other upstream 121323 23833031 ~ 23848624 (+) True adm2a
TU312075 other downstream 338323 24309936 ~ 24312938 (+) False LOC120553083
TU312157 other downstream 649199 24620812 ~ 24778258 (+) True G230148
TU312620 other downstream 2066674 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 2401123 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 2401123 26372736 ~ 26381109 (+) False mrps33

Expression Profile