RNA id: XR_005638107.1


Basic Information

Item Value
RNA id XR_005638107.1
length 706
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC120553125
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 9934175 ~ 9936593 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGGGAGTTTGATTGAAACGGAAGGGAGTTTGATTACTCAGCTCCTGATTGGTTGACAAAGAAGAAGCGGTATTTGACGGTCAAATTCCGGCACTGTCATTATAATAGTTTGGCTGAAGTGGAGCTGTAATGGATAGAGAGAGGCTAACTGAAGCTGTGGGTcttctaaataataatttaggaAATGGTGAGCTATTGTCAACGATGTCTCGACAATTAAATTAAGTCCAACAGAGCTCTGATTCGGAGATGCAGAGATTATTCAGGGGTGGAACTGCAAATCCAGTCAGACCTGGCTCCAGgctagcactgctacttctagcTAGCTCAATGGAACACGGAGGACCCCGTTACCAGACGAGACAGCGTTTCGGTGGATCGTCGTCGAAATCCAGGAAGAGATTATCTGGCCAATGCTGGGTGTCTAAGGCCTTTGAAACACATAGAAGACAAAGATCTCATGGTGGAGGATATCATCATGTTTCAGCTGTTTCATCGAGTTAGTGGAGCACTTCAAAGgTTCAGGGAGGGGATGAAGACCCTTGGTGTTCTTGATGCAATAAGAATGCACCCAGATGCTTTCAGACCGCTGTTTTGTCACGAGCCATCCCCACTCACAGCGGATGTACTAGAACTGTCAGCAGTGGGCAGGAACAAAAGAAGGGCAGAGGAATGTGTGCATTTTGGAGGGACTACCTGCTGGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307795 lncRNA upstream 66090 9867575 ~ 9868085 (+) True G226930
TU307786 lncRNA upstream 107650 9796473 ~ 9826525 (+) True G226921
TU307787 lncRNA upstream 127573 9806242 ~ 9806602 (+) True G226922
TU307781 lncRNA upstream 180059 9751944 ~ 9754116 (+) True G226918
TU307747 lncRNA upstream 279921 9651247 ~ 9654254 (+) True G226885
TU308026 lncRNA downstream 601603 10538196 ~ 10538689 (+) True G227088
TU308047 lncRNA downstream 688853 10625446 ~ 10627982 (+) True G227107
TU308048 lncRNA downstream 692215 10628808 ~ 10630212 (+) True G227108
TU308058 lncRNA downstream 729116 10665709 ~ 10667280 (+) True G227116
TU308091 lncRNA downstream 769317 10705910 ~ 10709545 (+) True G227139
XM_039791883.1 mRNA upstream 254360 9673991 ~ 9679815 (+) True cd36
XM_039791669.1 mRNA upstream 660267 9268198 ~ 9273908 (+) True LOC120553346
XM_039791670.1 mRNA upstream 660267 9268198 ~ 9273908 (+) False LOC120553346
XM_039791672.1 mRNA upstream 660267 9269069 ~ 9273908 (+) False LOC120553346
XM_039792211.1 mRNA upstream 692829 9237226 ~ 9241346 (+) True ndufb2
XM_039791601.1 mRNA downstream 16007 9952600 ~ 10029904 (+) False chrm2a
XM_039791603.1 mRNA downstream 16601 9953194 ~ 10029904 (+) False chrm2a
XM_039791602.1 mRNA downstream 17334 9953927 ~ 10029904 (+) True chrm2a
XM_039791146.1 mRNA downstream 164103 10100696 ~ 10103605 (+) True LOC120553071
XM_039792487.1 mRNA downstream 168338 10104931 ~ 10107323 (+) False LOC120553783
TU307644 other upstream 692826 9237264 ~ 9241349 (+) False ndufb2
XR_005638164.1 other upstream 760955 9134594 ~ 9173220 (+) True lhfpl3
TU307294 other upstream 1501478 8426691 ~ 8432697 (+) True rps16
TU307011 other upstream 2533776 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 2601916 7323070 ~ 7332259 (+) True amdhd1
unassigned_transcript_1481 other downstream 255733 10192326 ~ 10192412 (+) True trnay-gua_57
unassigned_transcript_1482 other downstream 257837 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1483 other downstream 258527 10195120 ~ 10195206 (+) True trnay-gua_59
TU308063 other downstream 760661 10697254 ~ 10699718 (+) True G227121
TU308097 other downstream 795476 10732069 ~ 10737503 (+) True G227141

Expression Profile