RNA id: XR_005638134.1


Basic Information

Item Value
RNA id XR_005638134.1
length 502
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id LOC120553214
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19717222 ~ 19718412 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgttttggcgtagggaggaggggccTGAGGGGAGGGACAAAGGGGCGTGGTGTACAggtaatttgcataggctactgggAGAGACCGCAGCTCCACAGGCATCCTCACAGATTACCCATATCTGCAATGGcttccacaagttcacctggaacctccaaatctcaaGCACCTTCGACTGGGAGGCAGCTTACGGAGAGACTGCTGAGAAGGCTTCAGGAAGTTCTGCAACGTCAGCCTGTGGATTTTGACTATTTACACTTACACTGTTTTTAGTCATGAAATGGGACTTGTACCCTTTCGCATAGGCCAGTACACATTAACCCTCATATGCATTAtcattgcatttactgtaatttgttAAGAAATATAGAGTCAAATTCTTacttgaatatatttatttgttattcacTGAAAAGGTACAGATTTAACTGTTTTGCTGGAGcccatactgtaaatgcatgtcATTTCAAAAATTGTTAAGGATTAAAATCAGTACTACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310533 lncRNA downstream 147863 19550617 ~ 19569359 (-) True G228885
TU310530 lncRNA downstream 202788 19514103 ~ 19514434 (-) True G228882
TU310528 lncRNA downstream 209662 19506683 ~ 19507560 (-) True G228881
TU310527 lncRNA downstream 217612 19499238 ~ 19499610 (-) True G228880
TU310514 lncRNA downstream 234069 19482867 ~ 19483153 (-) True G228871
TU310618 lncRNA upstream 134552 19852964 ~ 19905943 (-) True G228946
TU310627 lncRNA upstream 139691 19858103 ~ 19858863 (-) True G228949
TU310623 lncRNA upstream 158685 19877097 ~ 19882079 (-) True G228947
TU310720 lncRNA upstream 582690 20301102 ~ 20301438 (-) False cdk17
TU310764 lncRNA upstream 637224 20355636 ~ 20357563 (-) True G229062
XM_039792228.1 mRNA downstream 148165 19546626 ~ 19569057 (-) True lrig3
XM_039791749.1 mRNA downstream 212916 19495419 ~ 19504306 (-) False rpap3
XM_039791750.1 mRNA downstream 213298 19495419 ~ 19503924 (-) True rpap3
XM_039791748.1 mRNA downstream 213303 19495419 ~ 19503919 (-) False rpap3
XM_039791045.1 mRNA downstream 288793 19418241 ~ 19428429 (-) False LOC120553005
XM_039791390.1 mRNA upstream 14654 19733066 ~ 19806755 (-) False LOC120553212
XM_039791388.1 mRNA upstream 14654 19733066 ~ 19806755 (-) True LOC120553212
XM_039791379.1 mRNA upstream 88402 19806814 ~ 19839350 (-) True etv6
XM_039791380.1 mRNA upstream 89627 19808039 ~ 19839349 (-) False etv6
XM_039791378.1 mRNA upstream 89627 19808039 ~ 19839349 (-) False etv6
unassigned_transcript_1502 other downstream 264194 19452946 ~ 19453028 (-) True trnal-cag_24
unassigned_transcript_1501 other downstream 264672 19452469 ~ 19452550 (-) True trnal-cag_23
unassigned_transcript_1500 other downstream 265149 19451988 ~ 19452073 (-) True trnal-cag_22
unassigned_transcript_1499 other downstream 269076 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1498 other downstream 270119 19447021 ~ 19447103 (-) True trnal-cag_20
TU310604 other upstream 14690 19733102 ~ 19807098 (-) True G228934
TU310602 other upstream 92833 19811245 ~ 19839302 (-) False etv6
TU310603 other upstream 92833 19811245 ~ 19839302 (-) False etv6
TU310704 other upstream 348624 20067036 ~ 20122339 (-) False rerg
TU310933 other upstream 1239245 20957657 ~ 20958220 (-) True G229199

Expression Profile