RNA id: XR_005638141.1



Basic Information


Item Value
RNA id XR_005638141.1
length 1933
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id LOC120553257
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15169643 ~ 15178955 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGAACTCCTGGATCTGATCAAAGGACTCAAAGGCATACACGTTGTCACACAGCCATTCAATGATCTAAGAGGCaggatggaaacacacagggGACAGGAGTCAGTGTGCTCTAGGTTTGGGTCGTTTCCCATGTAAACCAGGAGCCAGTGAAGGGCAGCCAGGCGCTGAGGGTCAGCCTTACTGCTGGGACACCTTGGACGGAGTGTGTGTGCAATGACCTATAGGAATGAAAAGCGGATGGAGGTATGCGGCTTTCTGTGGCGACTGGTCGCTGCCCAGGGATACTCTGAACGTCTTTCTGCAGTCTGCAGGAGGGAACAGCTGCTGACACACACCTGCTTGTCGAATGTGTACAGGAGCTGTCGGAGAGAATATACAGACACATGGGAATGGGTCGTGCAGGAACACACGTGCACAAAAGCGAAATCTGCAGCACTAAAGGGAAAGAGACATGGGATTGACACACAGTACCTTGTTCTGTTTGGTGTTGGAGTCATATTTCCCAATTCTGGTGGTCCCTGTTGCCCCCTATCAAAATAGCATGGTCATTAAATCAATCATACTACAGAGATAGAAAATCTGTCCTGACCGAGTAAACCTTTTTTCCCCACTGGTGTCTTCCACCACATTGGTATGTGTGGAACTTCATGCTTGACCTCTTCATTACCTTGGCTGACCTTGCTGATTATCCTGACCTGACATGCTTCACTTCAGACCAGCGAATCACCACTTTTTCAGGTTCAGAAGATTTCAAATAAAAGGAAGAAGTCTACTCTGGCACAAAAATCCAAGGCACAGCGAGGAATACATAAAGCTGTGAACCATGCACAAAAAAGAGATTATTTCCTCTATGCAGGCTGCACACTATCTTTAACCTACTAAACCCAAAGACTCTTTGGCGGGTCTATCATTAAAAAGGTATGTTGTGCAGAGAAGCACGGTTCAGCACacagaactttattttaaattctaaCAAGGCTCCCAATGTTTCTTAAAATATGTTAAGCAGATTTATAGAGAAATCTGTATAAAagaatattgttgtttttttttttattttggtggtgTACATTTGATGATCAATGGTGGAGAAAATGGCATCTGGGATTTGAATATTTCAATCCCTGTGACTTCAGTGGACTGGGACAATCTGACACAGAATAGTTGGCAAACAGTATGCATACTGTATAATGTTATATCTAACATACACTAAGCTACTTAAGCCCCTCCCTCAAGATAAAAAGTAAacttctataaaaaaaaaagtataaaaaatacGTGGTTTAAGTGCAACAAAAAAGACAAGACAATGCACATGACATGGCAATGACAGTAAAAAGAAGTAAGACCAATGCAGGTTGTACCATAACTAAACTGTAAAGATCACTGGATTGATAAGGATTAGAATAATAACACTCACTTAATGAGTGCATTTCAGTAATAGGAAATGCTTAATAGGCATTGCCGTCACTATGGACTTACAGTACCTTCCAGGAGTAAAGGATGCCCCCATCTCTTTCAATGTTGAGGATACAAGTGTCCACTGCTCCAGAGTATTCTGCAGACACAGCATCATTATTTTGAACCATACATCTAATTATGTTTAAACAACAGTGTGCACTGTCAAACACGTTTTAGTATCCCTGCCACTGCTCATGCTGAAACATATTCCATGGTATGCTAAATGAGAATATAGTGTGTTTCCACTGTATAATAACATATTATTACACATGTAAAGTGCCCCAGATGTGTAGGTGAAATATTTGCCCAGAATCTGTAAATGTGCTGCTTAATGAGTCATAATGGGATGCTGATGCATTACTTGTATAACCACGTACTGTCAACCATTATTTCTTATGTTACAGTAAACTTTTGATTGcttagtaacattaacattaacgtTTATTTGAAAGTATTGCCATAATATTTGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU309355 lncRNA downstream 116358 15047327 ~ 15053285 (-) False grm8a
TU309363 lncRNA downstream 377174 14792245 ~ 14792469 (-) True G228022
TU309362 lncRNA downstream 394795 14774317 ~ 14774848 (-) True G228021
TU309361 lncRNA downstream 398676 14770498 ~ 14770967 (-) True G228020
TU309360 lncRNA downstream 399396 14769998 ~ 14770247 (-) True G228019
TU309413 lncRNA upstream 102511 15281466 ~ 15281669 (-) True G228063
TU309416 lncRNA upstream 111284 15290239 ~ 15290493 (-) True G228066
TU309417 lncRNA upstream 111919 15290874 ~ 15291223 (-) True G228067
TU309426 lncRNA upstream 141878 15320833 ~ 15345644 (-) True G228075
TU309428 lncRNA upstream 146530 15325485 ~ 15331156 (-) True G228077
XM_039791364.1 mRNA downstream 3411 15141912 ~ 15166232 (-) True nampt1
XM_039791363.1 mRNA downstream 29327 15128948 ~ 15140316 (-) True sypl1
XM_039792003.1 mRNA downstream 42873 15094407 ~ 15126770 (-) True atxn7l1
XM_039792005.1 mRNA downstream 42873 15096335 ~ 15126770 (-) False atxn7l1
XM_039792008.1 mRNA downstream 42900 15096335 ~ 15126743 (-) False atxn7l1
XM_039791479.1 mRNA upstream 25493 15204448 ~ 15257989 (-) False ccdc146
XM_039791478.1 mRNA upstream 25493 15204448 ~ 15257988 (-) True ccdc146
XM_039792209.1 mRNA upstream 152495 15331450 ~ 15338097 (-) True LOC120553603
XM_039792280.1 mRNA upstream 168044 15346999 ~ 15356337 (-) False LOC120553643
XM_039792279.1 mRNA upstream 168044 15346999 ~ 15356337 (-) True LOC120553643
TU309380 other downstream 81314 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 108214 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 1359964 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 1510371 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 1639865 13520265 ~ 13529778 (-) False LOC120553470
TU309610 other upstream 592283 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 1569887 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 2116167 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 2651717 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 2651717 17830672 ~ 18100995 (-) False tafa5a

Expression Profile