RNA id: XR_005638149.1


Basic Information

Item Value
RNA id XR_005638149.1
length 1071
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id LOC120553277
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8617814 ~ 8620495 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cggacttttcaCTCTTAAAAATACTGGGTTATTTTATTGACCCAACCACTGGGTTGAGGCTGTTTAACCCTGTATTATGTATATTCAACCCATATTGGGTTACTTTCAGTAACCCAGTAGTTGGGTTACTGGTTTTGGACTGTGCCTTGATCTGAATAACCCAACCAATGGTCATTTTAACCCAGTGGTTGGGTTACATTCAAGTTTGGGATCCTCCTCCAacggtctttttcttttcctccgagGCGGGAGAACACTTTTGGAAACACTGAAGCGGTTGAATATGGAGGACTTTGTTAAACTAAAGTTAACAGAACGGCAACTTCTTGAGCTGATTGACACTTTTGCAGATTGTGCAGGACTTCGAGGTTCTTCATAAAGAGGCATCAGACTAAATCTTTGACCTGGAGGAGGTTCAGCGAGAAGCTTGCTCATGCGGCCCAGTGGGAGGGGTAGAAGCTCCACGTGCAGACAGAGTCTTTGTCTCAAGTTAGAAATTATAACATCAACATAACCCTTAGATTTGTATATTTGGATTTGTGCATTATTCGAGCCATAAGCTACTCTATGATAATAGATAAATAAACTATGATAATACTTATGtcaaactattttctttctttacaggCTCCAAAGACTACATTGCCCTGATGGTTCTGCCAAGCCTGATTCCACCTGCAGTCTTCAGAAAGGGCCGAAAGACCGTGAGGACTACAGTGTCTGACGCCATGAAGGCCTTCATCGATCTTAAGCCTgTCGGAGCCAACATGGTGGAGTACCTTCAGGCAGCAGAGCAGACCAGGCCATACCCCTGCACCCTGGTGTTGGGAGGCGAGGACTGCTGCTCTCAGGCATTCACCGTTCTCAGTGAGCCGGCCCTGGAGCACGACAGCGTTGTCCAAGCTGTACATgtttgtgtcaaatgtttttatgtgtttgatATCAATTTCCCAAAGCAGTGTTTCTCTGCTTAGCAGTTCCTCCAGAAAGAATGGGGGGGTGGTAGTTTGTTTTTTGGAAATGCTCATGCGATAAgggaattctctctctctctgtctctctttctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307276 lncRNA upstream 209155 8341630 ~ 8408659 (+) False G226554
TU307280 lncRNA upstream 258532 8356330 ~ 8359282 (+) True G226556
TU307275 lncRNA upstream 274011 8341630 ~ 8343803 (+) True G226554
TU307221 lncRNA upstream 310986 8260333 ~ 8306828 (+) False G226515
TU307219 lncRNA upstream 354937 8260333 ~ 8262877 (+) True G226515
TU307369 lncRNA downstream 249523 8870018 ~ 8870711 (+) True G226638
TU307374 lncRNA downstream 261322 8881817 ~ 8883677 (+) True G226641
TU307514 lncRNA downstream 314555 8935050 ~ 8935551 (+) True G226720
XR_005638190.1 lncRNA downstream 321346 8941841 ~ 8943537 (+) True LOC120553611
TU307510 lncRNA downstream 391647 9012142 ~ 9012662 (+) True G226716
XM_039791529.1 mRNA upstream 52459 8515588 ~ 8565355 (+) True acss3
XM_039791202.1 mRNA upstream 146780 8468661 ~ 8471034 (+) True myf5
XM_039791157.1 mRNA upstream 153720 8462324 ~ 8464094 (+) True myf6
XM_039792276.1 mRNA upstream 188098 8426635 ~ 8429716 (+) False rps16
XM_039791585.1 mRNA upstream 605003 7978077 ~ 8012811 (+) False ppfibp1a
XM_039791532.1 mRNA downstream 182053 8802548 ~ 8807170 (+) True washc3
XM_039791533.1 mRNA downstream 198075 8818570 ~ 8845025 (+) True gnptab
XM_039791534.1 mRNA downstream 198075 8818570 ~ 8845025 (+) False gnptab
XM_039791812.1 mRNA downstream 297739 8918234 ~ 8926796 (+) True atp6v1e1b
XM_039792424.1 mRNA downstream 306577 8927072 ~ 8932977 (+) True LOC120553730
TU307294 other upstream 185117 8426691 ~ 8432697 (+) True rps16
TU307011 other upstream 1217415 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 1285555 7323070 ~ 7332259 (+) True amdhd1
TU307013 other upstream 1296765 7318540 ~ 7321049 (+) False snrpf
unassigned_transcript_1480 other upstream 1470474 7147269 ~ 7147340 (+) True trnaw-cca_35
XR_005638164.1 other downstream 514099 9134594 ~ 9173220 (+) True lhfpl3
TU307644 other downstream 616769 9237264 ~ 9241349 (+) False ndufb2
unassigned_transcript_1481 other downstream 1571831 10192326 ~ 10192412 (+) True trnay-gua_57
unassigned_transcript_1482 other downstream 1573935 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1483 other downstream 1574625 10195120 ~ 10195206 (+) True trnay-gua_59

Expression Profile