RNA id: XR_005638159.1


Basic Information

Item Value
RNA id XR_005638159.1
length 1259
lncRNA type intronic
GC content 0.43
exon number 3
gene id LOC120553381
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18905236 ~ 18908881 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acggtggtggactggtagtgCCCTGGAGTGCCTCGAGCAAGGCACAGATCGGCCTCGGGGTGCCTGTCCATGGGGGCACCCCCGAACTCTGACGTCTCTCcgttagtgcatgtataggtcctgagcacgtgtgtgtatttgggtctgtgtatgttgtgtgtaacTGTACCAACAGGGTGTAAAAATGGAATTGATAAAGTATGTATTCAACTTCTTCTGAACCTTCCGGTGCTGGTCAGACAAACTGCTGGGCATTACTCAACCGGAGCAGTGTTTATGTGTGGgggcgtgtctgtgtgtgtgagtgctggAGGGGTTGGAGGGCTTTTTATTTACATGGTCAACAAGTTGACATGAGAAGCTGGGTACCACTGCCGCATCTCAGCTCTTCCTGGCTTCTCTGGCATTTGTATTCTTTTCCAAAGCCTTTGGTGGAGCCTATATGAAGAGCTCCATCACCCAGATTGAGAGGCGCTTTGATATCCCTAGCTCCCTCATAGGGGTTAGAGATGGCAGCTTCGAAATGGAATGACATTCTTGGGGTTGATTACTGGACTCTACTTCCTCTCTAACATGCTCTGGGGAGGTGTCTACCGCACAGTTGTCAAGAGACAGAAGAAGTTAACACTGAGGAATCAGGCTAAAGAAAATGGACTAGAGGGTAACGCAGTGGAAAATGGACACGCCAACATCAGCACTGGCAAAAACAAAGAAGACGGGGACGACGAGAGCTCTATTTAAGGTGTTTGGGGAAGGCAACAATGCAAGTATTGCAAGTGAACAACACAGATTCTCTATTGCCAAAGTACTGTGCTGCATTTATAGTGAACCAAATGTGGTAATGGCACAGTGTCAGCAGTCTTTGGTCTTCGACCAGTAGCCTACAcctcattttttttacaaagataTCATGCTGAAAATATCGACtgctgtttgtttacttcaaagGTCAAAGCTTAGTTTTACTATGAACACCAATCAAATTACATTCAATTATATGCAATCCACTTCTGCACAAAAACATCAACTTAGAGGTCATTTTTAGCTCTACTTCAAAACAATCAAGAAAACAAAATGGGTGCTGTTCACTTGTAATGATGTTTACGTATGAAACAATTTTCAGTATGATGTTAGAGGAAGTGagaataaaatatgtaaaatatttgGAGAACTTTTGGCTTTTGAGCTTGTGTCCACCATTTATACCTGAATAGCATTAAGTAAGGTAAAGAttatggaatgccgttttaatcaatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638160.1 lncRNA upstream 7709 18892174 ~ 18897527 (+) True LOC120553383
TU310196 lncRNA upstream 49922 18850047 ~ 18855314 (+) False LOC120553630
TU310155 lncRNA upstream 165752 18738484 ~ 18739484 (+) True G228622
TU310143 lncRNA upstream 227671 18676351 ~ 18677565 (+) True G228611
TU310137 lncRNA upstream 241264 18604993 ~ 18663972 (+) True G228605
TU310389 lncRNA downstream 444123 19353004 ~ 19355518 (+) False LOC120553164
TU310390 lncRNA downstream 444123 19353004 ~ 19354472 (+) False LOC120553164
TU310391 lncRNA downstream 444123 19353004 ~ 19355361 (+) False LOC120553164
TU310392 lncRNA downstream 444123 19353004 ~ 19355361 (+) False LOC120553164
TU310405 lncRNA downstream 511491 19420372 ~ 19420829 (+) True G228787
XM_039792441.1 mRNA upstream 3894 18900615 ~ 18901342 (+) True LOC120553745
XM_039792440.1 mRNA upstream 15880 18862872 ~ 18889356 (+) True LOC120553744
XM_039792259.1 mRNA upstream 50596 18822832 ~ 18854640 (+) True LOC120553630
XM_039791724.1 mRNA downstream 6084 18914965 ~ 18927966 (+) True LOC120553378
XM_039791722.1 mRNA downstream 21389 18930270 ~ 18941975 (+) True LOC120553377
XM_039791723.1 mRNA downstream 21389 18930270 ~ 18941975 (+) False LOC120553377
XM_039791721.1 mRNA downstream 21670 18930551 ~ 18941975 (+) False LOC120553377
XM_039791725.1 mRNA downstream 37277 18946158 ~ 18948515 (+) True LOC120553379
TU310117 other upstream 374068 18530165 ~ 18531168 (+) False srr
unassigned_transcript_1495 other upstream 1315073 17590091 ~ 17590163 (+) True trnak-cuu_15
TU309802 other upstream 1982413 16919663 ~ 16922823 (+) True G228335
XR_005638118.1 other upstream 2073993 16771058 ~ 16831243 (+) False cald1a
TU310402 other downstream 501609 19410490 ~ 19413704 (+) True G228784
unassigned_transcript_1503 other downstream 550202 19459083 ~ 19459154 (+) True trnaq-uug_5
XR_005638131.1 other downstream 723066 19631947 ~ 19808412 (+) False LOC120553210
XR_005638132.1 other downstream 723066 19631947 ~ 19808412 (+) False LOC120553210
TU310593 other downstream 1073367 19982248 ~ 19985648 (+) True G228924

Expression Profile