RNA id: XR_005638167.1


Basic Information

Item Value
RNA id XR_005638167.1
length 542
lncRNA type inter_gene
GC content 0.45
exon number 5
gene id LOC120553441
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14500801 ~ 14547427 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagcCAACTCCATCATTCCCTCTTCATGCTGTGACTGGGAATACTGGATATGAATTTACATGCTCACATGCAGGCTCTATTCTCCATCTGCCAGCGTGTTCTGCAGCACTGCAGAGGCCAGCATCACAGACTCAGCACACAATGTGCCTTCAGAAATGGAGGACTGAGACATGCCGAAACATCTTACACTGAAGCCGTCCCTAAAGTGCTGACCTGCTGTCCAGCCTTGGCCCTGGAGGAGCAGGGAAAGAACAGACCTTTGAAGTGAAACGGATCTCCATCAGCCTCAGTGCTTTCACAAAGTAGCAGCTCAAATCTCTTGAGATGGAAAGAGACAGCAGCAAAGACATCCTACAGTTTCTGACTGCAGGCCATTGTACAGCACAGTAGAAGCCTGATGTATACAACACGAGGCACACACACTAAAGGATTCACCAGACGGTTAATATGGTAAAGTATTAGTTTTTGACTAAAGGGTTACTTAGAACTTTTCTTTTAGTACACTCTTTAAGCAATAACATTTCCAAATAGTGacacttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309224 lncRNA upstream 38327 14462161 ~ 14462474 (+) False LOC120553353
TU309225 lncRNA upstream 38354 14462161 ~ 14462447 (+) False LOC120553353
TU309215 lncRNA upstream 72215 14428185 ~ 14428586 (+) True G227896
TU309214 lncRNA upstream 73473 14427101 ~ 14427328 (+) True G227895
TU309182 lncRNA upstream 122107 14376864 ~ 14378694 (+) True G227875
TU309279 lncRNA downstream 222550 14769977 ~ 14770247 (+) True G227948
TU309280 lncRNA downstream 226886 14774313 ~ 14774820 (+) True G227949
TU309281 lncRNA downstream 246354 14793781 ~ 14796104 (+) True G227950
TU309302 lncRNA downstream 507278 15054705 ~ 15057478 (+) True G227970
TU309304 lncRNA downstream 512577 15060004 ~ 15060834 (+) True G227972
XM_039791686.1 mRNA upstream 38341 14454593 ~ 14462460 (+) False LOC120553353
XM_039791688.1 mRNA upstream 38341 14454598 ~ 14462460 (+) False LOC120553353
XM_039791683.1 mRNA upstream 38341 14454604 ~ 14462460 (+) False LOC120553353
XM_039791685.1 mRNA upstream 38341 14455325 ~ 14462460 (+) True LOC120553353
XM_039791687.1 mRNA upstream 38341 14456830 ~ 14462460 (+) False LOC120553353
XM_039791871.1 mRNA downstream 203353 14750780 ~ 14754250 (+) True LOC120553461
XM_039791477.1 mRNA downstream 621178 15168605 ~ 15199952 (+) True LOC120553256
XM_039791480.1 mRNA downstream 698731 15246158 ~ 15256323 (+) True fgl2a
XM_039791481.1 mRNA downstream 698731 15246158 ~ 15256323 (+) False fgl2a
XM_039791482.1 mRNA downstream 698871 15246298 ~ 15254589 (+) False fgl2a
TU309000 other upstream 495908 14002363 ~ 14004893 (+) False LOC120553485
TU309001 other upstream 495952 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1494 other upstream 665800 13834929 ~ 13835001 (+) True trnak-cuu_14
unassigned_transcript_1493 other upstream 666470 13834221 ~ 13834331 (+) True trnal-caa_24
unassigned_transcript_1492 other upstream 667652 13833039 ~ 13833149 (+) True trnal-caa_23
XR_005638140.1 other downstream 621177 15168604 ~ 15197830 (+) False LOC120553256
XR_005638118.1 other downstream 2223631 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other downstream 2223635 16771062 ~ 16831243 (+) False cald1a
TU309802 other downstream 2372236 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 3042664 17590091 ~ 17590163 (+) True trnak-cuu_15

Expression Profile