RNA id: XR_005638172.1


Basic Information

Item Value
RNA id XR_005638172.1
length 167
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC120553487
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14115743 ~ 14116336 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTTGTGTGATGGACTGGACAACAGCTCCAGATGTGTAAATCATTCAATCTTCAAACAGgCTGGAGTTGGAAACTACAGCCTTGTTTATGAGAAGccTTGTCTTCCTACAGTCTTATCCCTTGTAAAAAGACGCACCTCCACGTTTTGGGTCGCCATGACATCTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308995 lncRNA upstream 61519 14016098 ~ 14054224 (+) False G227743
TU308988 lncRNA upstream 61519 14050419 ~ 14054224 (+) True G227743
TU308986 lncRNA upstream 68758 14032395 ~ 14046985 (+) True G227742
TU308980 lncRNA upstream 146056 13967543 ~ 13969687 (+) True G227736
TU308978 lncRNA upstream 150251 13956697 ~ 13965492 (+) True G227734
TU309111 lncRNA downstream 102973 14219309 ~ 14219604 (+) True G227811
TU309146 lncRNA downstream 209801 14326137 ~ 14333923 (+) True G227843
TU309181 lncRNA downstream 258483 14374819 ~ 14375465 (+) True G227874
TU309182 lncRNA downstream 260528 14376864 ~ 14378694 (+) True G227875
TU309214 lncRNA downstream 310765 14427101 ~ 14427328 (+) True G227895
XM_039791946.1 mRNA upstream 110838 14002132 ~ 14004905 (+) True LOC120553485
XM_039791948.1 mRNA upstream 110838 14002132 ~ 14004905 (+) False LOC120553485
XM_039791942.1 mRNA upstream 176464 13902858 ~ 13939279 (+) True adipor2
XM_039791941.1 mRNA upstream 220742 13881031 ~ 13895001 (+) False wnt5b
XM_039791909.1 mRNA downstream 20855 14137191 ~ 14144663 (+) False LOC120553474
XM_039791912.1 mRNA downstream 20855 14137191 ~ 14144663 (+) False LOC120553474
XM_039791908.1 mRNA downstream 20857 14137193 ~ 14144663 (+) True LOC120553474
XM_039791913.1 mRNA downstream 21251 14137587 ~ 14144663 (+) False LOC120553474
XM_039791927.1 mRNA downstream 28445 14144781 ~ 14159988 (+) True LOC120553478
TU309000 other upstream 110850 14002363 ~ 14004893 (+) False LOC120553485
TU309001 other upstream 110894 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1494 other upstream 280742 13834929 ~ 13835001 (+) True trnak-cuu_14
unassigned_transcript_1493 other upstream 281412 13834221 ~ 13834331 (+) True trnal-caa_24
unassigned_transcript_1492 other upstream 282594 13833039 ~ 13833149 (+) True trnal-caa_23
XR_005638140.1 other downstream 1052268 15168604 ~ 15197830 (+) False LOC120553256
XR_005638118.1 other downstream 2654722 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other downstream 2654726 16771062 ~ 16831243 (+) False cald1a
TU309802 other downstream 2803327 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 3473755 17590091 ~ 17590163 (+) True trnak-cuu_15

Expression Profile