RNA id: XR_005638173.1


Basic Information

Item Value
RNA id XR_005638173.1
length 1181
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC120553495
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10914935 ~ 10927854 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGGGCCCCACCACACTGGCCGCGCCACTCGTCATCTTGAAGGCAAAGTGTCCAAGAGGACATGACTTGGACAGCCCACACTTGTACCTGACTGGCTTTGCTGCTGTGAAGAGAGAAAACTCCATTTACACAACAAGAACCAGGTAGCACAATATCAGGTGGCGCTCCAGTGATTTGGAGAACAGGATGCCGCGGTCATCTGATGTGTACATGGTTCCAAAGAAGGTGTCTGTATTGAAACAGAAGAAAGagaagaagagaaaggcacCGATGTAGCCAAAACTGTAGATGTCCTCGTGGATTGTTGTGAAGGTCTGCCCCAGATCCTTTGTCCTCTTCAGCACTAAATCCCCCCTCTCATCTGCATAAACTGTGGTGACAAAAAGCAAGACTTGGTGACAGGAATACTCAGGACTCTAATTTATTGGTTTTCCCTTTGCTTTAATTCAATTTTCAGTTTTCAATTTTagcttaaaaactaaaaaaattttaaaatcttGATTGTAAGATGGAGTGTGGATGGAAAGCAAAATCCATGTTAGTCAATCCAGACCATCCTCTTGTTTGAGATGAAATTTTCATTTATTccaagtaaaatgaatttgcTTTATTCAAATATACCATAAAATGTTGTAATAAtattttattcttattcttatcttttgtcattttttgtcaaattgcctttttttattgtatttaatatCGTGTGATACAGCAATCACACTGTTACTGTCAGAGGACAGGAGCTTGATATTGTTAATGAATTCAAGTATCTTGGGGTCATGTATGACTCCACCCTAACGTTCAAAAGTCATGTGAAAAGGGTGGtaaataaagttaaatttaACTTGCAGAATTTTAAACAAGTTAGGGCATTTCTTGATAACAATTCTGCCAAGTTGTTTCTTTATACTATGATCCTTTCACATATtgaatattgttttattaaCTGGTCACTAACTAGTGTAACTACTCTTAAAAGTATTGAAtctctatttaagaaagccatAAAAACTTACGATAAAAAGGCATTGTCATTTCACCATTGCGATATCTTACAGAGACATACATTTTTTAGTTTTGaaaattttaaacattttaggtATGCGTGTTTGATATATAAAGTGTTACATGATCTTGCCCCCCCCTCCGCTGCGTGACTTCATTCGGAGACTTG

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308118 lncRNA upstream 42256 10872047 ~ 10872679 (+) True G227155
TU308115 lncRNA upstream 42256 10872100 ~ 10872679 (+) False G227155
TU308112 lncRNA upstream 62984 10842556 ~ 10851951 (+) False G227152
TU308111 lncRNA upstream 63131 10842556 ~ 10851804 (+) True G227152
XR_005638094.1 lncRNA upstream 144264 10761253 ~ 10770671 (+) True LOC120553079
TU308143 lncRNA downstream 7250 10935104 ~ 10935745 (+) True G227177
TU308163 lncRNA downstream 28630 10956484 ~ 10963552 (+) True G227184
TU308164 lncRNA downstream 35115 10962969 ~ 10976314 (+) False G227184
XR_005638081.1 lncRNA downstream 39785 10967639 ~ 10968248 (+) True LOC120553015
TU308188 lncRNA downstream 83260 11011114 ~ 11011315 (+) True G227204
XM_039791229.1 mRNA upstream 240884 10672048 ~ 10674051 (+) True si:dkeyp-38g8.5
XM_039791219.1 mRNA upstream 255924 10648321 ~ 10659011 (+) True scyl2
XM_039791220.1 mRNA upstream 255924 10648321 ~ 10659011 (+) False scyl2
XM_039791221.1 mRNA upstream 271164 10638588 ~ 10643771 (+) True depdc4
XM_039792002.1 mRNA upstream 392698 10379970 ~ 10522237 (+) False anks1b
XM_039791053.1 mRNA downstream 20432 10948286 ~ 10986201 (+) True impdh1b
XM_039791054.1 mRNA downstream 20432 10948286 ~ 10986201 (+) False impdh1b
XM_039791055.1 mRNA downstream 20433 10948287 ~ 10986201 (+) False impdh1b
XM_039791056.1 mRNA downstream 20433 10948287 ~ 10986201 (+) False impdh1b
XM_039791058.1 mRNA downstream 23409 10951263 ~ 10986201 (+) False impdh1b
TU308097 other upstream 177432 10732069 ~ 10737503 (+) True G227141
TU308063 other upstream 215217 10697254 ~ 10699718 (+) True G227121
unassigned_transcript_1483 other upstream 719729 10195120 ~ 10195206 (+) True trnay-gua_59
unassigned_transcript_1482 other upstream 720419 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1481 other upstream 722523 10192326 ~ 10192412 (+) True trnay-gua_57
XR_005638076.1 other downstream 20431 10948285 ~ 10986201 (+) False impdh1b
TU308205 other downstream 174982 11102836 ~ 11112905 (+) False G227216
TU308207 other downstream 174982 11102836 ~ 11112905 (+) False G227216
TU308276 other downstream 761315 11689169 ~ 11757317 (+) True G227278
TU308397 other downstream 1193018 12120872 ~ 12126545 (+) False st8sia1

Expression Profile