RNA id: XR_005638192.1


Basic Information

Item Value
RNA id XR_005638192.1
length 919
lncRNA type inter_gene
GC content 0.53
exon number 4
gene id LOC120553621
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 6429094 ~ 6501060 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTAGGTGATGACTCCATTCGTGTTTATTCGTCTTATTCCCAGTTTATTTTCCCTCTTTGATATAGATGCTGTTTTCAGCCGGGCGCGTGGGAGCACAGACTGAGAGAGACTTGGCAAAGCGTCGTATTTTTCCTCTCCAGGACAGCCCTAtacctggagagagagagagagagagagagcgagagcgagagcgtTTCTCACTCAGGCAAACCTGAGACTGAACTTGGATGCAAACTGCTGTAGCTGCCATTGTCAAGCTGTCAGCGGACTCGTGTAATTATCCTCTTGAAAAGTATCGCGGAGCCATTATCCACAAAGTACCCGTTATAGGTGCTCAGAGGCAACACATGACGGGACCGGCGCACCATCAGCATCCAGTGACGACGTCCACGAGTAGGTGAAGATGAACCGGCCTTTCTGATCAAAGGACCCGTCTATAAAGCTCAAGGCTGGCCTTCCTAGACGGTGAATCACTGCACACTGGACTGGCCGCCCGGCCACGCCCCCCAACAGTGATGTCAGAGCAGGTGTTTCCCATCAGCTGTTAAAGgCCTCACCATTCACGCCCCTTTGTAACTCGAGCTGCTCAGATTGATGGGAGGATGGCTCTCATTTGGACCAGGAGAAAAGTGGCCAGTTTAAGGGCTGCTACTGTATTTTAAACGGCACTGGTGTTAAAGAGACTGATGTGCCTGGTGGCGTCGGCGGCAACGGTGACCCTCCCTCCTGGCTGGGTGCAAAACTCCCATTGGGAGAATAAGAGAGAAGAAGGGGGAAGGAAGGCGGGAGGAGGGGGCGAGGACGGGAATGAATCTGCGTGGCGGCGGGAATCGATCGTTTCTCCCTCCTTCCCGCGCTATCTCATCTGCAGGGGCTGAGAGAGGCAGAGTGGTTTAAACGATCCTGACCTTGTCCGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638108.1 lncRNA upstream 139195 6183044 ~ 6289899 (+) True LOC120553126
TU306637 lncRNA upstream 331186 6097678 ~ 6097908 (+) True G226097
TU306625 lncRNA upstream 509680 5919094 ~ 5919414 (+) True G226085
TU306571 lncRNA upstream 652661 5750128 ~ 5776433 (+) True G226042
TU306558 lncRNA upstream 875769 5552521 ~ 5553325 (+) True G226029
TU306694 lncRNA downstream 181658 6682718 ~ 6686625 (+) False prkcq
TU306925 lncRNA downstream 656430 7157490 ~ 7157887 (+) True G226292
TU306949 lncRNA downstream 712332 7213392 ~ 7216386 (+) True G226306
TU306966 lncRNA downstream 766449 7267509 ~ 7268219 (+) False G226316
TU306965 lncRNA downstream 766767 7267827 ~ 7268758 (+) True G226316
XM_039791340.1 mRNA upstream 1029791 5393640 ~ 5399303 (+) True echdc3
XM_039791339.1 mRNA upstream 1036154 5383033 ~ 5392940 (+) False kcnj8
XM_039791338.1 mRNA upstream 1036154 5383034 ~ 5392940 (+) True kcnj8
XM_039792020.1 mRNA upstream 1055457 5283759 ~ 5373637 (+) False abcc9
XM_039792084.1 mRNA downstream 12785 6513845 ~ 6519452 (+) True kin
XM_039791177.1 mRNA downstream 34115 6535175 ~ 6553086 (+) True itih5
XM_039791178.1 mRNA downstream 78052 6579112 ~ 6636681 (+) False sfmbt2
XM_039791183.1 mRNA downstream 78052 6579112 ~ 6636681 (+) False sfmbt2
XM_039791182.1 mRNA downstream 78498 6579558 ~ 6636681 (+) False sfmbt2
XR_005638175.1 other upstream 1055891 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other upstream 1055891 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other upstream 1055891 5283759 ~ 5373203 (+) False abcc9
TU306390 other upstream 1771125 4657444 ~ 4657969 (+) True G225894
unassigned_transcript_1479 other upstream 2232279 4196705 ~ 4196815 (+) True trnal-caa_19
unassigned_transcript_1480 other downstream 646209 7147269 ~ 7147340 (+) True trnaw-cca_35
TU307013 other downstream 817480 7318540 ~ 7321049 (+) False snrpf
XR_005638075.1 other downstream 822010 7323070 ~ 7332259 (+) True amdhd1
TU307011 other downstream 895434 7396494 ~ 7400399 (+) False nrip2
TU307294 other downstream 1925631 8426691 ~ 8432697 (+) True rps16

Expression Profile