RNA id: XR_005638193.1


Basic Information

Item Value
RNA id XR_005638193.1
length 1453
lncRNA type sense_over
GC content 0.48
exon number 4
gene id LOC120553625
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7891409 ~ 7955485 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tGGAGGGCGGTGTTTAACATCCAGTCCCGCCTACCGGACCATTAACGACCGCCGCCACGTGTACTATCCTCATCTTCTGACCCACCCTGAAACCCACCTTCATGAATGCGGAAGCACACAGTAACTGGACAATGAAGGGGATATAGCTGCAAATTCACTGCTGGCTTCTGCAATCAAATTGGAGGTTGCATACGTTTTGATGGAGGTAGTGTTCTCACTCTACCTGTGACCATCAGGGCGTCTGTGGAGGTTTGGGTGAAGGACACGAACCTTGACTCTCAAAGCTTGTTGCTCTTCCCGGCCACTGCAAGAATCCATCACAGCCTCCACCACCCAAACCTTTCATCGGACCTGAGAGCTCTGCATGTTGATGGACAAGCAGCCAGTTGTCAAGCTAATCAAGGTGTCTGTGAGGCGCGCTGCTCTCAGTGTGGTGCTGAAGGCGTGAGTGGAAATAATGAGCCGAGGTCCTGTCTTTGACCCATAGCTAATGCTGTACACTGCAATCCCCCTGCCCTTCTCCTTCACAAACATCAATGCCAGGGTTGTTGTTTCCCACAACAACCCGACTCTCACAATTTCTCCTCCATGTATAATTGCTAATGAAGTAACTTTGGAGATTACTAGTCGCCTGGGAAGCCCAGTAAGCCATTACATAATTGAGGTTAGGGGGTAATTGCAAGCACGCTAAAATATGAGAGTGTACATGCACGGCTTCGATAGAATCCCATTAACGGAAGCATAACTGTGTTGACATGTCTGAGACATTCTGTAGCTTAGGTGAGATTCAAAACTGTATTCATGTCCCACAGTTtgctgcatgcacacacaagctAATTAATGCACGAGCGGTGCAggggaagaaaaggaaaaacctGCAATTACAGTCAGTATAACAAACTACTGTAAGAGCAAGagggggttaacacttttgcaaggcaaggcactgtatccgtgtcacattctcgaCTGAGACAGGCTgagccccctaaaggtctgatcctagaattgcCCCTGCCCTGGTGTATCTGCTGTCTCAGTATTAACGCTGctataaagggaaaagccaaagGGAACTTCAGCAGGAACTGACAGGCTGCCACCGAACTGAAGCAGGCAACCGGAGGCCAGACCTGTAAAGCATTACATTGTGAAAGTGTTGCTGCTGACCTCCGGTCTGTGTGTCTGatgctactgctgctaccaGCTGTTAATATTTAATGAAAGGATGAGATGAATCAGTGGCTCAACCTTCATCCATCATTCATGCATCACAATGTGCAATTATTTAAGAATGAGCAGCCAGGCAGTGCTACagttctctggtttattggcatttcatgaaaccaatcacaatcgtcatgggcagcgcTAGGTCCCGTGTGGAgccacagtgccgctgcaaaatagcctcgggaaggaacttgtttgggtggaacatgtgtacctcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307137 lncRNA upstream 183839 7616188 ~ 7707570 (+) False G226452
TU307138 lncRNA upstream 269678 7616188 ~ 7621731 (+) True G226452
TU307120 lncRNA upstream 322207 7566730 ~ 7569202 (+) False LOC120553156
TU307093 lncRNA upstream 359389 7530442 ~ 7532020 (+) False LOC120553154
TU307039 lncRNA upstream 465239 7425057 ~ 7426170 (+) False ascl1a
TU307206 lncRNA downstream 68876 8024361 ~ 8028661 (+) True G226505
TU307208 lncRNA downstream 92294 8047779 ~ 8057052 (+) False G226507
TU307210 lncRNA downstream 96287 8051772 ~ 8057617 (+) True G226507
TU307219 lncRNA downstream 304848 8260333 ~ 8262877 (+) True G226515
TU307221 lncRNA downstream 304848 8260333 ~ 8306828 (+) False G226515
XM_039791873.1 mRNA upstream 3884 7869761 ~ 7887525 (+) True LOC120553463
XM_039792172.1 mRNA upstream 285571 7592879 ~ 7605838 (+) False LOC120553589
XM_039792174.1 mRNA upstream 285571 7592998 ~ 7605838 (+) True LOC120553589
XM_039791255.1 mRNA upstream 322106 7566655 ~ 7569303 (+) True LOC120553156
XM_039791254.1 mRNA upstream 329204 7546428 ~ 7562205 (+) True LOC120553155
XM_039791580.1 mRNA downstream 22592 7978077 ~ 8012811 (+) True ppfibp1a
XM_039791581.1 mRNA downstream 22592 7978077 ~ 8012811 (+) False ppfibp1a
XM_039791582.1 mRNA downstream 22592 7978077 ~ 8012811 (+) False ppfibp1a
XM_039791583.1 mRNA downstream 22592 7978077 ~ 8012811 (+) False ppfibp1a
XM_039791585.1 mRNA downstream 22592 7978077 ~ 8012811 (+) False ppfibp1a
TU307011 other upstream 491010 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 559150 7323070 ~ 7332259 (+) True amdhd1
TU307013 other upstream 570360 7318540 ~ 7321049 (+) False snrpf
unassigned_transcript_1480 other upstream 744069 7147269 ~ 7147340 (+) True trnaw-cca_35
XR_005638177.1 other upstream 2518206 5283759 ~ 5373203 (+) False abcc9
TU307294 other downstream 471206 8426691 ~ 8432697 (+) True rps16
XR_005638164.1 other downstream 1179109 9134594 ~ 9173220 (+) True lhfpl3
TU307644 other downstream 1281779 9237264 ~ 9241349 (+) False ndufb2
unassigned_transcript_1481 other downstream 2236841 10192326 ~ 10192412 (+) True trnay-gua_57
unassigned_transcript_1482 other downstream 2238945 10194430 ~ 10194516 (+) True trnay-gua_58

Expression Profile