RNA id: XR_005638234.1


Basic Information

Item Value
RNA id XR_005638234.1
length 186
RNA type snRNA
GC content 0.40
exon number 1
gene id LOC120553833
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 28501234 ~ 28501419 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAATgtgtttaataataaaaaaaaaataaaaaatctgttcttatcagtttaatatctgatatGTCCTCTATCAGGGGACAACATATTAAATGGATTTTTGCCgatgtagttgaaaaaggggCTTGCTCCATTCGCTCCACGCATCGACCCGGTATTGCAGCGCGGCCGGGAACGGTGCACCCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313228 lncRNA upstream 48439 28415891 ~ 28452795 (+) True G231033
TU313226 lncRNA upstream 104120 28396912 ~ 28397114 (+) True G231031
TU313224 lncRNA upstream 119667 28381321 ~ 28381567 (+) True G231029
TU313218 lncRNA upstream 145866 28355014 ~ 28355368 (+) True G231023
TU313217 lncRNA upstream 146929 28354093 ~ 28354305 (+) True G231022
TU313300 lncRNA downstream 84323 28585742 ~ 28585943 (+) True G231094
XR_005638181.1 lncRNA downstream 106464 28607883 ~ 28616127 (+) True LOC120553529
TU313307 lncRNA downstream 106467 28607886 ~ 28616103 (+) False LOC120553529
TU313341 lncRNA downstream 242652 28744071 ~ 28744338 (+) True G231122
TU313344 lncRNA downstream 244483 28745902 ~ 28746127 (+) True G231125
XM_039792180.1 mRNA upstream 207688 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA upstream 207688 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA upstream 207688 28149733 ~ 28293546 (+) False LOC120553593
XM_039791037.1 mRNA upstream 477616 28016843 ~ 28023618 (+) True LOC120552999
XM_039791440.1 mRNA upstream 541836 27913712 ~ 27959398 (+) False LOC120553234
XM_039792477.1 mRNA downstream 115836 28617255 ~ 28630012 (+) True LOC120553776
XM_039791124.1 mRNA downstream 589538 29090957 ~ 29099400 (+) True LOC120553059
XM_039791125.1 mRNA downstream 589563 29090982 ~ 29099400 (+) False LOC120553059
unassigned_transcript_1531 other upstream 30056 28471106 ~ 28471178 (+) True trnak-uuu_24
unassigned_transcript_1530 other upstream 30356 28470806 ~ 28470878 (+) True trnat-ugu_41
TU313169 other upstream 443016 28057731 ~ 28058218 (+) True G230975
TU313087 other upstream 553761 27941321 ~ 27947473 (+) True G230904
TU313012 other upstream 897532 27603005 ~ 27603702 (+) True G230842
XR_005638238.1 other downstream 79068 28580487 ~ 28580602 (+) True LOC120553840
TU313309 other downstream 111136 28612555 ~ 28620865 (+) False LOC120553776
TU313332 other downstream 143617 28645036 ~ 28645537 (+) True G231113
XR_005638249.1 other downstream 310433 28811852 ~ 28811952 (+) True LOC120553854
XR_005638247.1 other downstream 311906 28813325 ~ 28813435 (+) True LOC120553851