RNA id: XR_005638249.1


Basic Information

Item Value
RNA id XR_005638249.1
length 101
RNA type snRNA
GC content 0.48
exon number 1
gene id LOC120553854
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 28811852 ~ 28811952 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgcttgctcaggcagcacatATGACAAAATTGGAACGATACAGAGAAGATTAGCGCCCGATGGATGCCACGGCAAATTCGGTGAAGCGTTACCACATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313354 lncRNA upstream 19107 28791960 ~ 28792745 (+) True G231135
TU313351 lncRNA upstream 40283 28770614 ~ 28771569 (+) True G231132
TU313348 lncRNA upstream 44222 28767321 ~ 28767630 (+) True G231129
TU313344 lncRNA upstream 65725 28745902 ~ 28746127 (+) True G231125
TU313341 lncRNA upstream 67514 28744071 ~ 28744338 (+) True G231122
XR_005638111.1 lncRNA downstream 64511 28876463 ~ 28877100 (+) True LOC120553132
TU313401 lncRNA downstream 163084 28975036 ~ 28975830 (+) True G231166
XR_005638195.1 lncRNA downstream 217025 29028977 ~ 29031361 (+) True LOC120553663
TU313443 lncRNA downstream 256378 29068330 ~ 29070464 (+) True G231199
TU313447 lncRNA downstream 264162 29076114 ~ 29076444 (+) True G231203
XM_039792477.1 mRNA upstream 181840 28617255 ~ 28630012 (+) True LOC120553776
XM_039792180.1 mRNA upstream 518306 28149732 ~ 28293546 (+) True LOC120553593
XM_039792181.1 mRNA upstream 518306 28149733 ~ 28293546 (+) False LOC120553593
XM_039792183.1 mRNA upstream 518306 28149733 ~ 28293546 (+) False LOC120553593
XM_039791037.1 mRNA upstream 788234 28016843 ~ 28023618 (+) True LOC120552999
XM_039791124.1 mRNA downstream 279005 29090957 ~ 29099400 (+) True LOC120553059
XM_039791125.1 mRNA downstream 279030 29090982 ~ 29099400 (+) False LOC120553059
TU313332 other upstream 166315 28645036 ~ 28645537 (+) True G231113
TU313309 other upstream 190987 28612555 ~ 28620865 (+) False LOC120553776
XR_005638238.1 other upstream 231250 28580487 ~ 28580602 (+) True LOC120553840
XR_005638234.1 other upstream 310433 28501234 ~ 28501419 (+) True LOC120553833
unassigned_transcript_1531 other upstream 340674 28471106 ~ 28471178 (+) True trnak-uuu_24
XR_005638247.1 other downstream 1373 28813325 ~ 28813435 (+) True LOC120553851
XR_005638248.1 other downstream 7993 28819945 ~ 28820054 (+) True LOC120553852
XR_005638246.1 other downstream 9423 28821375 ~ 28821482 (+) True LOC120553849
XR_005638217.1 other downstream 10584 28822536 ~ 28822700 (+) True LOC120553815
XR_005638218.1 other downstream 11891 28823843 ~ 28824002 (+) True LOC120553816