RNA id: unassigned_transcript_1435


Basic Information

Item Value
RNA id unassigned_transcript_1435
length 73
RNA type tRNA
GC content 0.56
exon number 1
gene id trnat-cgu_9
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 2885810 ~ 2885882 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTCCATAGCTCAGAGGTTAGAGCACTGGTCTCGTAAACCAGGGGTCGTGAGTTCAACTCTCACTGGGGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305589 lncRNA upstream 105286 2780055 ~ 2780524 (+) True G225377
TU305548 lncRNA upstream 127403 2756389 ~ 2758407 (+) True G225346
TU305539 lncRNA upstream 135412 2740384 ~ 2750398 (+) False G225344
TU305662 lncRNA downstream 49008 2934890 ~ 2937696 (+) False G225419
TU305664 lncRNA downstream 49008 2934890 ~ 2937696 (+) True G225419
TU305666 lncRNA downstream 53506 2939388 ~ 2945892 (+) True G225420
TU305676 lncRNA downstream 67525 2953407 ~ 2953726 (+) True G225428
TU305680 lncRNA downstream 77507 2963389 ~ 2964031 (+) True G225432
XM_039792515.1 mRNA upstream 28145 2798467 ~ 2857665 (+) True LOC120553800
XM_039792267.1 mRNA upstream 134128 2714117 ~ 2751682 (+) False LOC120553634
XM_039792103.1 mRNA downstream 224959 3110841 ~ 3117640 (+) True LOC120553565
XM_039792104.1 mRNA downstream 224959 3110841 ~ 3117640 (+) False LOC120553565
XM_039792417.1 mRNA downstream 290658 3176540 ~ 3246203 (+) True LOC120553724
XM_039792418.1 mRNA downstream 374797 3260679 ~ 3302750 (+) True LOC120553725
XM_039792284.1 mRNA downstream 443068 3328950 ~ 3347986 (+) True cct2
unassigned_transcript_1434 other upstream 337 2885401 ~ 2885473 (+) True trnat-cgu_8
unassigned_transcript_1433 other upstream 1872 2883866 ~ 2883938 (+) True trnat-cgu_7
unassigned_transcript_1432 other upstream 2906 2882832 ~ 2882904 (+) True trnat-ugu_10
unassigned_transcript_1431 other upstream 5620 2880118 ~ 2880190 (+) True trnat-ugu_9
unassigned_transcript_1430 other upstream 6647 2879091 ~ 2879163 (+) True trnat-ugu_8
unassigned_transcript_1436 other downstream 1162 2887044 ~ 2887116 (+) True trnat-ugu_11
unassigned_transcript_1437 other downstream 4510 2890392 ~ 2890464 (+) True trnat-ugu_12
unassigned_transcript_1438 other downstream 5888 2891770 ~ 2891842 (+) True trnat-ugu_13
unassigned_transcript_1439 other downstream 6561 2892443 ~ 2892515 (+) True trnat-ugu_14
unassigned_transcript_1440 other downstream 7666 2893548 ~ 2893620 (+) True trnat-cgu_10