RNA id: unassigned_transcript_1441


Basic Information

Item Value
RNA id unassigned_transcript_1441
length 73
RNA type tRNA
GC content 0.49
exon number 1
gene id trnai-uau_28
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 2895284 ~ 2895356 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTCCATAGCTCAGGGGTTAGAGCACTGGTCTTATAAATCAGGGATTGTGAGTTCAATTCTCACTGGGGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305589 lncRNA upstream 114760 2780055 ~ 2780524 (+) True G225377
TU305548 lncRNA upstream 136877 2756389 ~ 2758407 (+) True G225346
TU305539 lncRNA upstream 144886 2740384 ~ 2750398 (+) False G225344
TU305662 lncRNA downstream 39534 2934890 ~ 2937696 (+) False G225419
TU305664 lncRNA downstream 39534 2934890 ~ 2937696 (+) True G225419
TU305666 lncRNA downstream 44032 2939388 ~ 2945892 (+) True G225420
TU305676 lncRNA downstream 58051 2953407 ~ 2953726 (+) True G225428
TU305680 lncRNA downstream 68033 2963389 ~ 2964031 (+) True G225432
XM_039792515.1 mRNA upstream 37619 2798467 ~ 2857665 (+) True LOC120553800
XM_039792267.1 mRNA upstream 143602 2714117 ~ 2751682 (+) False LOC120553634
XM_039792103.1 mRNA downstream 215485 3110841 ~ 3117640 (+) True LOC120553565
XM_039792104.1 mRNA downstream 215485 3110841 ~ 3117640 (+) False LOC120553565
XM_039792417.1 mRNA downstream 281184 3176540 ~ 3246203 (+) True LOC120553724
XM_039792418.1 mRNA downstream 365323 3260679 ~ 3302750 (+) True LOC120553725
XM_039792284.1 mRNA downstream 433594 3328950 ~ 3347986 (+) True cct2
unassigned_transcript_1440 other upstream 1664 2893548 ~ 2893620 (+) True trnat-cgu_10
unassigned_transcript_1439 other upstream 2769 2892443 ~ 2892515 (+) True trnat-ugu_14
unassigned_transcript_1438 other upstream 3442 2891770 ~ 2891842 (+) True trnat-ugu_13
unassigned_transcript_1437 other upstream 4820 2890392 ~ 2890464 (+) True trnat-ugu_12
unassigned_transcript_1436 other upstream 8168 2887044 ~ 2887116 (+) True trnat-ugu_11
unassigned_transcript_1442 other downstream 606 2895962 ~ 2896034 (+) True trnat-ugu_15
unassigned_transcript_1443 other downstream 1713 2897069 ~ 2897141 (+) True trnat-cgu_11
unassigned_transcript_1444 other downstream 3444 2898800 ~ 2898872 (+) True trnai-uau_29
unassigned_transcript_1445 other downstream 4855 2900211 ~ 2900283 (+) True trnat-cgu_12
unassigned_transcript_1446 other downstream 5781 2901137 ~ 2901209 (+) True trnat-ugu_16