RNA id: unassigned_transcript_1446


Basic Information

Item Value
RNA id unassigned_transcript_1446
length 73
RNA type tRNA
GC content 0.55
exon number 1
gene id trnat-ugu_16
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 2901137 ~ 2901209 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTCCATAGCTCAGGGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGTGAGTTCAATTCTCACTGGGGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305589 lncRNA upstream 120613 2780055 ~ 2780524 (+) True G225377
TU305548 lncRNA upstream 142730 2756389 ~ 2758407 (+) True G225346
TU305539 lncRNA upstream 150739 2740384 ~ 2750398 (+) False G225344
TU305662 lncRNA downstream 33681 2934890 ~ 2937696 (+) False G225419
TU305664 lncRNA downstream 33681 2934890 ~ 2937696 (+) True G225419
TU305666 lncRNA downstream 38179 2939388 ~ 2945892 (+) True G225420
TU305676 lncRNA downstream 52198 2953407 ~ 2953726 (+) True G225428
TU305680 lncRNA downstream 62180 2963389 ~ 2964031 (+) True G225432
XM_039792515.1 mRNA upstream 43472 2798467 ~ 2857665 (+) True LOC120553800
XM_039792267.1 mRNA upstream 149455 2714117 ~ 2751682 (+) False LOC120553634
XM_039792103.1 mRNA downstream 209632 3110841 ~ 3117640 (+) True LOC120553565
XM_039792104.1 mRNA downstream 209632 3110841 ~ 3117640 (+) False LOC120553565
XM_039792417.1 mRNA downstream 275331 3176540 ~ 3246203 (+) True LOC120553724
XM_039792418.1 mRNA downstream 359470 3260679 ~ 3302750 (+) True LOC120553725
XM_039792284.1 mRNA downstream 427741 3328950 ~ 3347986 (+) True cct2
unassigned_transcript_1445 other upstream 854 2900211 ~ 2900283 (+) True trnat-cgu_12
unassigned_transcript_1444 other upstream 2265 2898800 ~ 2898872 (+) True trnai-uau_29
unassigned_transcript_1443 other upstream 3996 2897069 ~ 2897141 (+) True trnat-cgu_11
unassigned_transcript_1442 other upstream 5103 2895962 ~ 2896034 (+) True trnat-ugu_15
unassigned_transcript_1441 other upstream 5781 2895284 ~ 2895356 (+) True trnai-uau_28
unassigned_transcript_1447 other downstream 1209 2902418 ~ 2902490 (+) True trnat-ugu_17
unassigned_transcript_1448 other downstream 2619 2903828 ~ 2903900 (+) True trnat-ugu_18
unassigned_transcript_1449 other downstream 3292 2904501 ~ 2904573 (+) True trnat-ugu_19
unassigned_transcript_1450 other downstream 6127 2907336 ~ 2907408 (+) True trnai-uau_30
unassigned_transcript_1451 other downstream 7435 2908644 ~ 2908716 (+) True trnai-uau_31