RNA id: unassigned_transcript_1449


Basic Information

Item Value
RNA id unassigned_transcript_1449
length 73
RNA type tRNA
GC content 0.55
exon number 1
gene id trnat-ugu_19
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 2904501 ~ 2904573 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTCCATAGCTCAGGGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGTGAGTTCAATTCTCACTGGGGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305589 lncRNA upstream 123977 2780055 ~ 2780524 (+) True G225377
TU305548 lncRNA upstream 146094 2756389 ~ 2758407 (+) True G225346
TU305539 lncRNA upstream 154103 2740384 ~ 2750398 (+) False G225344
TU305662 lncRNA downstream 30317 2934890 ~ 2937696 (+) False G225419
TU305664 lncRNA downstream 30317 2934890 ~ 2937696 (+) True G225419
TU305666 lncRNA downstream 34815 2939388 ~ 2945892 (+) True G225420
TU305676 lncRNA downstream 48834 2953407 ~ 2953726 (+) True G225428
TU305680 lncRNA downstream 58816 2963389 ~ 2964031 (+) True G225432
XM_039792515.1 mRNA upstream 46836 2798467 ~ 2857665 (+) True LOC120553800
XM_039792267.1 mRNA upstream 152819 2714117 ~ 2751682 (+) False LOC120553634
XM_039792103.1 mRNA downstream 206268 3110841 ~ 3117640 (+) True LOC120553565
XM_039792104.1 mRNA downstream 206268 3110841 ~ 3117640 (+) False LOC120553565
XM_039792417.1 mRNA downstream 271967 3176540 ~ 3246203 (+) True LOC120553724
XM_039792418.1 mRNA downstream 356106 3260679 ~ 3302750 (+) True LOC120553725
XM_039792284.1 mRNA downstream 424377 3328950 ~ 3347986 (+) True cct2
unassigned_transcript_1448 other upstream 601 2903828 ~ 2903900 (+) True trnat-ugu_18
unassigned_transcript_1447 other upstream 2011 2902418 ~ 2902490 (+) True trnat-ugu_17
unassigned_transcript_1446 other upstream 3292 2901137 ~ 2901209 (+) True trnat-ugu_16
unassigned_transcript_1445 other upstream 4218 2900211 ~ 2900283 (+) True trnat-cgu_12
unassigned_transcript_1444 other upstream 5629 2898800 ~ 2898872 (+) True trnai-uau_29
unassigned_transcript_1450 other downstream 2763 2907336 ~ 2907408 (+) True trnai-uau_30
unassigned_transcript_1451 other downstream 4071 2908644 ~ 2908716 (+) True trnai-uau_31
unassigned_transcript_1452 other downstream 7451 2912024 ~ 2912096 (+) True trnat-ugu_20
unassigned_transcript_1453 other downstream 8699 2913272 ~ 2913344 (+) True trnat-ugu_21
unassigned_transcript_1454 other downstream 9372 2913945 ~ 2914017 (+) True trnat-ugu_22