RNA id: unassigned_transcript_1454


Basic Information

Item Value
RNA id unassigned_transcript_1454
length 73
RNA type tRNA
GC content 0.55
exon number 1
gene id trnat-ugu_22
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 2913945 ~ 2914017 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTCCATAGCTCAGGGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGTGAGTTCAATTCTCACTGGGGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305589 lncRNA upstream 133421 2780055 ~ 2780524 (+) True G225377
TU305548 lncRNA upstream 155538 2756389 ~ 2758407 (+) True G225346
TU305539 lncRNA upstream 163547 2740384 ~ 2750398 (+) False G225344
TU305662 lncRNA downstream 20873 2934890 ~ 2937696 (+) False G225419
TU305664 lncRNA downstream 20873 2934890 ~ 2937696 (+) True G225419
TU305666 lncRNA downstream 25371 2939388 ~ 2945892 (+) True G225420
TU305676 lncRNA downstream 39390 2953407 ~ 2953726 (+) True G225428
TU305680 lncRNA downstream 49372 2963389 ~ 2964031 (+) True G225432
XM_039792515.1 mRNA upstream 56280 2798467 ~ 2857665 (+) True LOC120553800
XM_039792267.1 mRNA upstream 162263 2714117 ~ 2751682 (+) False LOC120553634
XM_039792103.1 mRNA downstream 196824 3110841 ~ 3117640 (+) True LOC120553565
XM_039792104.1 mRNA downstream 196824 3110841 ~ 3117640 (+) False LOC120553565
XM_039792417.1 mRNA downstream 262523 3176540 ~ 3246203 (+) True LOC120553724
XM_039792418.1 mRNA downstream 346662 3260679 ~ 3302750 (+) True LOC120553725
XM_039792284.1 mRNA downstream 414933 3328950 ~ 3347986 (+) True cct2
unassigned_transcript_1453 other upstream 601 2913272 ~ 2913344 (+) True trnat-ugu_21
unassigned_transcript_1452 other upstream 1849 2912024 ~ 2912096 (+) True trnat-ugu_20
unassigned_transcript_1451 other upstream 5229 2908644 ~ 2908716 (+) True trnai-uau_31
unassigned_transcript_1450 other upstream 6537 2907336 ~ 2907408 (+) True trnai-uau_30
unassigned_transcript_1449 other upstream 9372 2904501 ~ 2904573 (+) True trnat-ugu_19
unassigned_transcript_1455 other downstream 569 2914586 ~ 2914658 (+) True trnat-ugu_23
unassigned_transcript_1456 other downstream 1595 2915612 ~ 2915684 (+) True trnat-ugu_24
unassigned_transcript_1457 other downstream 2792 2916809 ~ 2916881 (+) True trnat-ugu_25
unassigned_transcript_1458 other downstream 3452 2917469 ~ 2917541 (+) True trnat-ugu_26
unassigned_transcript_1459 other downstream 5076 2919093 ~ 2919165 (+) True trnat-ugu_27