RNA id: unassigned_transcript_1473


Basic Information

Item Value
RNA id unassigned_transcript_1473
length 84
RNA type tRNA
GC content 0.58
exon number 2
gene id trnal-caa_13
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 4186561 ~ 4186671 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTCCAAGTGGaggcgtgggttcaaatcccactccTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306253 lncRNA upstream 21540 4164429 ~ 4165021 (+) True G225790
TU306247 lncRNA upstream 46284 4138528 ~ 4140277 (+) True G225785
TU306149 lncRNA upstream 135438 3996965 ~ 4051123 (+) True G225721
TU306160 lncRNA upstream 144835 4041405 ~ 4041726 (+) True G225725
TU306161 lncRNA upstream 144835 4041405 ~ 4041726 (+) False G225725
TU306267 lncRNA downstream 25407 4212078 ~ 4212312 (+) True G225804
TU306268 lncRNA downstream 84122 4270793 ~ 4271236 (+) True G225805
TU306270 lncRNA downstream 122436 4309107 ~ 4309388 (+) True G225807
TU306265 lncRNA downstream 263389 4450060 ~ 4453432 (+) True G225802
TU306315 lncRNA downstream 286940 4473611 ~ 4475015 (+) True G225842
XM_039791116.1 mRNA upstream 10737 4155295 ~ 4175824 (+) True LOC120553052
XM_039791111.1 mRNA upstream 78916 4093660 ~ 4107645 (+) False LOC120553050
XM_039791110.1 mRNA upstream 78916 4093661 ~ 4107645 (+) True LOC120553050
XM_039791112.1 mRNA upstream 79971 4093661 ~ 4106590 (+) False LOC120553050
XM_039791103.1 mRNA upstream 167519 3998734 ~ 4019042 (+) True LOC120553047
XM_039792062.1 mRNA downstream 14001 4200672 ~ 4448037 (+) False LOC120553538
XM_039792061.1 mRNA downstream 14147 4200818 ~ 4448037 (+) True LOC120553538
XM_039792060.1 mRNA downstream 14147 4200818 ~ 4448037 (+) False LOC120553538
XM_039792065.1 mRNA downstream 14147 4200818 ~ 4448037 (+) False LOC120553538
XM_039792064.1 mRNA downstream 14147 4200818 ~ 4448037 (+) False LOC120553538
TU306138 other upstream 247607 3935674 ~ 3938954 (+) False LOC120553793
TU305947 other upstream 345387 3832746 ~ 3841174 (+) True LOC120553144
unassigned_transcript_1472 other upstream 651889 3534600 ~ 3534672 (+) True trnat-ugu_40
unassigned_transcript_1471 other upstream 652900 3533589 ~ 3533661 (+) True trnat-ugu_39
unassigned_transcript_1470 other upstream 654481 3532008 ~ 3532080 (+) True trnat-ugu_38
unassigned_transcript_1474 other downstream 1498 4188169 ~ 4188279 (+) True trnal-caa_14
unassigned_transcript_1475 other downstream 1947 4188618 ~ 4188728 (+) True trnal-caa_15
unassigned_transcript_1476 other downstream 3558 4190229 ~ 4190339 (+) True trnal-caa_16
unassigned_transcript_1477 other downstream 4005 4190676 ~ 4190786 (+) True trnal-caa_17
unassigned_transcript_1478 other downstream 7131 4193802 ~ 4193912 (+) True trnal-caa_18