RNA id: unassigned_transcript_1478


Basic Information

Item Value
RNA id unassigned_transcript_1478
length 84
RNA type tRNA
GC content 0.57
exon number 2
gene id trnal-caa_18
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 4193802 ~ 4193912 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTCCAATTGGaggcgtgggttcaaatcccactccTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306253 lncRNA upstream 28781 4164429 ~ 4165021 (+) True G225790
TU306247 lncRNA upstream 53525 4138528 ~ 4140277 (+) True G225785
TU306149 lncRNA upstream 142679 3996965 ~ 4051123 (+) True G225721
TU306267 lncRNA downstream 18166 4212078 ~ 4212312 (+) True G225804
TU306268 lncRNA downstream 76881 4270793 ~ 4271236 (+) True G225805
TU306270 lncRNA downstream 115195 4309107 ~ 4309388 (+) True G225807
TU306265 lncRNA downstream 256148 4450060 ~ 4453432 (+) True G225802
TU306315 lncRNA downstream 279699 4473611 ~ 4475015 (+) True G225842
XM_039791116.1 mRNA upstream 17978 4155295 ~ 4175824 (+) True LOC120553052
XM_039791111.1 mRNA upstream 86157 4093660 ~ 4107645 (+) False LOC120553050
XM_039791110.1 mRNA upstream 86157 4093661 ~ 4107645 (+) True LOC120553050
XM_039791112.1 mRNA upstream 87212 4093661 ~ 4106590 (+) False LOC120553050
XM_039791103.1 mRNA upstream 174760 3998734 ~ 4019042 (+) True LOC120553047
XM_039792062.1 mRNA downstream 6760 4200672 ~ 4448037 (+) False LOC120553538
XM_039792061.1 mRNA downstream 6906 4200818 ~ 4448037 (+) True LOC120553538
XM_039792060.1 mRNA downstream 6906 4200818 ~ 4448037 (+) False LOC120553538
XM_039792065.1 mRNA downstream 6906 4200818 ~ 4448037 (+) False LOC120553538
XM_039792064.1 mRNA downstream 6906 4200818 ~ 4448037 (+) False LOC120553538
unassigned_transcript_1477 other upstream 3016 4190676 ~ 4190786 (+) True trnal-caa_17
unassigned_transcript_1476 other upstream 3463 4190229 ~ 4190339 (+) True trnal-caa_16
unassigned_transcript_1475 other upstream 5074 4188618 ~ 4188728 (+) True trnal-caa_15
unassigned_transcript_1474 other upstream 5523 4188169 ~ 4188279 (+) True trnal-caa_14
unassigned_transcript_1473 other upstream 7131 4186561 ~ 4186671 (+) True trnal-caa_13
unassigned_transcript_1479 other downstream 2793 4196705 ~ 4196815 (+) True trnal-caa_19
TU306390 other downstream 463532 4657444 ~ 4657969 (+) True G225894
XR_005638175.1 other downstream 1089847 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other downstream 1089847 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other downstream 1089847 5283759 ~ 5373203 (+) False abcc9