RNA id: unassigned_transcript_1480


Basic Information

Item Value
RNA id unassigned_transcript_1480
length 72
RNA type tRNA
GC content 0.54
exon number 1
gene id trnaw-cca_35
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7147269 ~ 7147340 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTCTGTGGCGCAACGGTAGTGCGTCTGACTCCAGATTAGAAGGTTGCGTGTTCAAATCACGTCAGGGtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306694 lncRNA upstream 460644 6682718 ~ 6686625 (+) False prkcq
XR_005638192.1 lncRNA upstream 646209 6429094 ~ 6501060 (+) True LOC120553621
XR_005638108.1 lncRNA upstream 857370 6183044 ~ 6289899 (+) True LOC120553126
TU306637 lncRNA upstream 1049361 6097678 ~ 6097908 (+) True G226097
TU306625 lncRNA upstream 1227855 5919094 ~ 5919414 (+) True G226085
TU306925 lncRNA downstream 10150 7157490 ~ 7157887 (+) True G226292
TU306949 lncRNA downstream 66052 7213392 ~ 7216386 (+) True G226306
TU306966 lncRNA downstream 120169 7267509 ~ 7268219 (+) False G226316
TU306965 lncRNA downstream 120487 7267827 ~ 7268758 (+) True G226316
TU306967 lncRNA downstream 121764 7269104 ~ 7270753 (+) True G226317
XM_039792095.1 mRNA upstream 3264 7115962 ~ 7144005 (+) True lamb1b
XM_039792272.1 mRNA upstream 47265 7089340 ~ 7100004 (+) True dclre1c
XM_039791779.1 mRNA upstream 74266 7051855 ~ 7073003 (+) True cd9b
XM_039791780.1 mRNA upstream 74266 7059285 ~ 7073003 (+) False cd9b
XM_039791507.1 mRNA upstream 134989 7000299 ~ 7012280 (+) False LOC120553268
XM_039791418.1 mRNA downstream 93512 7240852 ~ 7255885 (+) True vezt
XM_039791419.1 mRNA downstream 93512 7240852 ~ 7255885 (+) False vezt
XM_039791420.1 mRNA downstream 94009 7241349 ~ 7255885 (+) False vezt
XM_039791597.1 mRNA downstream 109930 7257270 ~ 7267450 (+) True metap2a
XM_039791101.1 mRNA downstream 171177 7318517 ~ 7321189 (+) True snrpf
XR_005638175.1 other upstream 1774066 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other upstream 1774066 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other upstream 1774066 5283759 ~ 5373203 (+) False abcc9
TU306390 other upstream 2489300 4657444 ~ 4657969 (+) True G225894
unassigned_transcript_1479 other upstream 2950454 4196705 ~ 4196815 (+) True trnal-caa_19
TU307013 other downstream 171200 7318540 ~ 7321049 (+) False snrpf
XR_005638075.1 other downstream 175730 7323070 ~ 7332259 (+) True amdhd1
TU307011 other downstream 249154 7396494 ~ 7400399 (+) False nrip2
TU307294 other downstream 1279351 8426691 ~ 8432697 (+) True rps16
XR_005638164.1 other downstream 1987254 9134594 ~ 9173220 (+) True lhfpl3