RNA id: unassigned_transcript_1481


Basic Information

Item Value
RNA id unassigned_transcript_1481
length 73
RNA type tRNA
GC content 0.53
exon number 2
gene id trnay-gua_57
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10192326 ~ 10192412 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CcttcgatagctcagttggtagagcggaggACTGTAGATCCTTAGGTCGCTGGTTCAAATCCGGCTCGAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638107.1 lncRNA upstream 255733 9934175 ~ 9936593 (+) True LOC120553125
TU307795 lncRNA upstream 324241 9867575 ~ 9868085 (+) True G226930
TU307786 lncRNA upstream 365801 9796473 ~ 9826525 (+) True G226921
TU307787 lncRNA upstream 385724 9806242 ~ 9806602 (+) True G226922
TU307781 lncRNA upstream 438210 9751944 ~ 9754116 (+) True G226918
TU308026 lncRNA downstream 345784 10538196 ~ 10538689 (+) True G227088
TU308047 lncRNA downstream 433034 10625446 ~ 10627982 (+) True G227107
TU308048 lncRNA downstream 436396 10628808 ~ 10630212 (+) True G227108
TU308058 lncRNA downstream 473297 10665709 ~ 10667280 (+) True G227116
TU308091 lncRNA downstream 513498 10705910 ~ 10709545 (+) True G227139
XM_039792082.1 mRNA upstream 9044 10175143 ~ 10183282 (+) True LOC120553550
XM_039792304.1 mRNA upstream 18212 10165497 ~ 10174114 (+) False def6c
XM_039792306.1 mRNA upstream 18212 10165537 ~ 10174114 (+) False def6c
XM_039792305.1 mRNA upstream 18212 10165651 ~ 10174114 (+) True def6c
XM_039792425.1 mRNA upstream 30672 10160731 ~ 10161654 (+) True LOC120553731
XM_039791715.1 mRNA downstream 8362 10200774 ~ 10225902 (+) True pacsin2
XM_039791717.1 mRNA downstream 8362 10200774 ~ 10225902 (+) False pacsin2
XM_039791716.1 mRNA downstream 8362 10200774 ~ 10225902 (+) False pacsin2
XM_039791718.1 mRNA downstream 8362 10200774 ~ 10225902 (+) False pacsin2
XM_039792107.1 mRNA downstream 34217 10226629 ~ 10234656 (+) True arfgap3
TU307644 other upstream 950977 9237264 ~ 9241349 (+) False ndufb2
XR_005638164.1 other upstream 1019106 9134594 ~ 9173220 (+) True lhfpl3
TU307294 other upstream 1759629 8426691 ~ 8432697 (+) True rps16
TU307011 other upstream 2791927 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 2860067 7323070 ~ 7332259 (+) True amdhd1
unassigned_transcript_1482 other downstream 2018 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1483 other downstream 2708 10195120 ~ 10195206 (+) True trnay-gua_59
TU308063 other downstream 504842 10697254 ~ 10699718 (+) True G227121
TU308097 other downstream 539657 10732069 ~ 10737503 (+) True G227141
XR_005638076.1 other downstream 755873 10948285 ~ 10986201 (+) False impdh1b