RNA id: unassigned_transcript_1483


Basic Information

Item Value
RNA id unassigned_transcript_1483
length 73
RNA type tRNA
GC content 0.51
exon number 2
gene id trnay-gua_59
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10195120 ~ 10195206 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CcttcgatagctcagttggtagagcggaggACTGTAGATCCTTAGGTCGCTGGTTCAAATCCTGTTCGAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638107.1 lncRNA upstream 258527 9934175 ~ 9936593 (+) True LOC120553125
TU307795 lncRNA upstream 327035 9867575 ~ 9868085 (+) True G226930
TU307786 lncRNA upstream 368595 9796473 ~ 9826525 (+) True G226921
TU307787 lncRNA upstream 388518 9806242 ~ 9806602 (+) True G226922
TU307781 lncRNA upstream 441004 9751944 ~ 9754116 (+) True G226918
TU308026 lncRNA downstream 342990 10538196 ~ 10538689 (+) True G227088
TU308047 lncRNA downstream 430240 10625446 ~ 10627982 (+) True G227107
TU308048 lncRNA downstream 433602 10628808 ~ 10630212 (+) True G227108
TU308058 lncRNA downstream 470503 10665709 ~ 10667280 (+) True G227116
TU308091 lncRNA downstream 510704 10705910 ~ 10709545 (+) True G227139
XM_039792082.1 mRNA upstream 11838 10175143 ~ 10183282 (+) True LOC120553550
XM_039792304.1 mRNA upstream 21006 10165497 ~ 10174114 (+) False def6c
XM_039792306.1 mRNA upstream 21006 10165537 ~ 10174114 (+) False def6c
XM_039792305.1 mRNA upstream 21006 10165651 ~ 10174114 (+) True def6c
XM_039792425.1 mRNA upstream 33466 10160731 ~ 10161654 (+) True LOC120553731
XM_039791715.1 mRNA downstream 5568 10200774 ~ 10225902 (+) True pacsin2
XM_039791717.1 mRNA downstream 5568 10200774 ~ 10225902 (+) False pacsin2
XM_039791716.1 mRNA downstream 5568 10200774 ~ 10225902 (+) False pacsin2
XM_039791718.1 mRNA downstream 5568 10200774 ~ 10225902 (+) False pacsin2
XM_039792107.1 mRNA downstream 31423 10226629 ~ 10234656 (+) True arfgap3
unassigned_transcript_1482 other upstream 604 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1481 other upstream 2708 10192326 ~ 10192412 (+) True trnay-gua_57
TU307644 other upstream 953771 9237264 ~ 9241349 (+) False ndufb2
XR_005638164.1 other upstream 1021900 9134594 ~ 9173220 (+) True lhfpl3
TU307294 other upstream 1762423 8426691 ~ 8432697 (+) True rps16
TU308063 other downstream 502048 10697254 ~ 10699718 (+) True G227121
TU308097 other downstream 536863 10732069 ~ 10737503 (+) True G227141
XR_005638076.1 other downstream 753079 10948285 ~ 10986201 (+) False impdh1b
TU308205 other downstream 907630 11102836 ~ 11112905 (+) False G227216
TU308207 other downstream 907630 11102836 ~ 11112905 (+) False G227216