RNA id: unassigned_transcript_1488


Basic Information

Item Value
RNA id unassigned_transcript_1488
length 73
RNA type tRNA
GC content 0.62
exon number 1
gene id trnak-cuu_12
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 13774987 ~ 13775059 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCCGgctagctcagtcggtagagcatGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308840 lncRNA upstream 220161 13554250 ~ 13554826 (+) True G227662
TU308823 lncRNA upstream 243440 13516482 ~ 13531547 (+) True G227646
TU308813 lncRNA upstream 281126 13493401 ~ 13493861 (+) True G227639
TU308615 lncRNA upstream 699639 13071545 ~ 13075348 (+) True G227510
TU308594 lncRNA upstream 731969 12987713 ~ 13043018 (+) True G227499
TU308978 lncRNA downstream 181638 13956697 ~ 13965492 (+) True G227734
TU308980 lncRNA downstream 192484 13967543 ~ 13969687 (+) True G227736
TU308995 lncRNA downstream 241039 14016098 ~ 14054224 (+) False G227743
TU308986 lncRNA downstream 257336 14032395 ~ 14046985 (+) True G227742
TU308988 lncRNA downstream 275360 14050419 ~ 14054224 (+) True G227743
XM_039791933.1 mRNA upstream 107250 13660950 ~ 13667737 (+) True LOC120553479
XM_039791944.1 mRNA upstream 115753 13630954 ~ 13659234 (+) False LOC120553484
XM_039791943.1 mRNA upstream 117225 13630951 ~ 13657762 (+) True LOC120553484
XM_039791945.1 mRNA upstream 118397 13630951 ~ 13656590 (+) False LOC120553484
XM_039791773.1 mRNA upstream 284568 13480903 ~ 13490419 (+) False napepld
XM_039791937.1 mRNA downstream 27134 13802193 ~ 13895001 (+) True wnt5b
XM_039791936.1 mRNA downstream 27134 13802193 ~ 13895001 (+) False wnt5b
XM_039791938.1 mRNA downstream 27134 13802193 ~ 13895001 (+) False wnt5b
XM_039791940.1 mRNA downstream 27134 13802193 ~ 13895001 (+) False wnt5b
XM_039791941.1 mRNA downstream 105972 13881031 ~ 13895001 (+) False wnt5b
unassigned_transcript_1487 other upstream 4810 13770066 ~ 13770177 (+) True trnal-caa_20
unassigned_transcript_1486 other upstream 5860 13769055 ~ 13769127 (+) True trnak-cuu_11
TU308903 other upstream 89106 13674824 ~ 13685881 (+) False LOC120553473
TU308693 other upstream 295960 13475145 ~ 13479027 (+) False yeats4
XR_005638103.1 other upstream 754727 13005339 ~ 13020260 (+) False nrf1
unassigned_transcript_1489 other downstream 26589 13801648 ~ 13801760 (+) True trnal-caa_21
unassigned_transcript_1490 other downstream 27034 13802093 ~ 13802203 (+) True trnal-caa_22
unassigned_transcript_1492 other downstream 57980 13833039 ~ 13833149 (+) True trnal-caa_23
unassigned_transcript_1493 other downstream 59162 13834221 ~ 13834331 (+) True trnal-caa_24
unassigned_transcript_1494 other downstream 59870 13834929 ~ 13835001 (+) True trnak-cuu_14