RNA id: unassigned_transcript_1493


Basic Information

Item Value
RNA id unassigned_transcript_1493
length 84
RNA type tRNA
GC content 0.56
exon number 2
gene id trnal-caa_24
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 13834221 ~ 13834331 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTCCTAATGGaggcgtgggttcaaatcccacttcTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308840 lncRNA upstream 279395 13554250 ~ 13554826 (+) True G227662
TU308823 lncRNA upstream 302674 13516482 ~ 13531547 (+) True G227646
TU308813 lncRNA upstream 340360 13493401 ~ 13493861 (+) True G227639
TU308615 lncRNA upstream 758873 13071545 ~ 13075348 (+) True G227510
TU308594 lncRNA upstream 791203 12987713 ~ 13043018 (+) True G227499
TU308978 lncRNA downstream 122366 13956697 ~ 13965492 (+) True G227734
TU308980 lncRNA downstream 133212 13967543 ~ 13969687 (+) True G227736
TU308995 lncRNA downstream 181767 14016098 ~ 14054224 (+) False G227743
TU308986 lncRNA downstream 198064 14032395 ~ 14046985 (+) True G227742
TU308988 lncRNA downstream 216088 14050419 ~ 14054224 (+) True G227743
XM_039791904.1 mRNA upstream 35841 13674804 ~ 13798380 (+) False LOC120553473
XM_039791941.1 mRNA downstream 46700 13881031 ~ 13895001 (+) False wnt5b
XM_039791935.1 mRNA downstream 47220 13881551 ~ 13895001 (+) False wnt5b
XM_039791942.1 mRNA downstream 68527 13902858 ~ 13939279 (+) True adipor2
XM_039791946.1 mRNA downstream 167801 14002132 ~ 14004905 (+) True LOC120553485
XM_039791948.1 mRNA downstream 167801 14002132 ~ 14004905 (+) False LOC120553485
unassigned_transcript_1492 other upstream 1072 13833039 ~ 13833149 (+) True trnal-caa_23
unassigned_transcript_1490 other upstream 32018 13802093 ~ 13802203 (+) True trnal-caa_22
unassigned_transcript_1489 other upstream 32461 13801648 ~ 13801760 (+) True trnal-caa_21
unassigned_transcript_1488 other upstream 59162 13774987 ~ 13775059 (+) True trnak-cuu_12
unassigned_transcript_1487 other upstream 64044 13770066 ~ 13770177 (+) True trnal-caa_20
unassigned_transcript_1494 other downstream 598 13834929 ~ 13835001 (+) True trnak-cuu_14
TU309000 other downstream 168032 14002363 ~ 14004893 (+) False LOC120553485
TU309001 other downstream 168032 14002363 ~ 14004849 (+) False LOC120553485
XR_005638140.1 other downstream 1334273 15168604 ~ 15197830 (+) False LOC120553256
XR_005638118.1 other downstream 2936727 16771058 ~ 16831243 (+) False cald1a