RNA id: unassigned_transcript_1504


Basic Information

Item Value
RNA id unassigned_transcript_1504
length 84
RNA type tRNA
GC content 0.55
exon number 2
gene id trnal-caa_25
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21579313 ~ 21579423 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAGGATGGCCGAGGAATCTAAGGCGCCAGACTCAAGTTCTGGTCTCCAAATGGaggcgtgggttcaaatcccactccTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311136 lncRNA upstream 2124 21514850 ~ 21577189 (+) False G229352
TU311134 lncRNA upstream 54597 21514863 ~ 21524716 (+) True G229352
TU311145 lncRNA upstream 56890 21503644 ~ 21522423 (+) False G229352
TU311091 lncRNA upstream 150075 21428303 ~ 21429238 (+) False arid2
TU311019 lncRNA upstream 308202 21265412 ~ 21271111 (+) True G229264
TU311175 lncRNA downstream 40550 21619973 ~ 21620222 (+) True G229381
TU311181 lncRNA downstream 57674 21637097 ~ 21637359 (+) True G229386
TU311190 lncRNA downstream 86775 21666198 ~ 21666434 (+) True G229395
TU311191 lncRNA downstream 88290 21667713 ~ 21667988 (+) True G229396
TU311194 lncRNA downstream 103196 21682619 ~ 21683484 (+) True G229399
XM_039791832.1 mRNA upstream 126787 21433581 ~ 21452526 (+) False scaf11
XM_039791828.1 mRNA upstream 126787 21433582 ~ 21452526 (+) True scaf11
XM_039791831.1 mRNA upstream 126787 21433582 ~ 21452526 (+) False scaf11
XM_039791830.1 mRNA upstream 126787 21433582 ~ 21452526 (+) False scaf11
XM_039791778.1 mRNA upstream 150581 21376872 ~ 21428732 (+) True arid2
XM_039791040.1 mRNA downstream 45079 21624502 ~ 21630444 (+) True LOC120553001
XM_039791170.1 mRNA downstream 178230 21757653 ~ 21766517 (+) True LOC120553089
XM_039791166.1 mRNA downstream 187484 21766907 ~ 21801671 (+) False LOC120553088
XM_039791167.1 mRNA downstream 207793 21787216 ~ 21801671 (+) True LOC120553088
XM_039791169.1 mRNA downstream 208144 21787567 ~ 21801672 (+) False LOC120553088
TU310736 other upstream 1187907 20382426 ~ 20391406 (+) False ucmaa
TU310663 other upstream 1405914 20147078 ~ 20173399 (+) False LOC120553749
TU310661 other upstream 1405914 20170719 ~ 20173399 (+) False LOC120553749
TU310593 other upstream 1593665 19982248 ~ 19985648 (+) True G228924
XR_005638131.1 other upstream 1770901 19631947 ~ 19808412 (+) False LOC120553210
unassigned_transcript_1505 other downstream 481 21579904 ~ 21580014 (+) True trnal-caa_26
unassigned_transcript_1506 other downstream 829 21580252 ~ 21580362 (+) True trnal-caa_27
unassigned_transcript_1507 other downstream 1074 21580497 ~ 21580607 (+) True trnal-caa_28
unassigned_transcript_1508 other downstream 1319 21580742 ~ 21580852 (+) True trnal-caa_29
unassigned_transcript_1509 other downstream 1667 21581090 ~ 21581200 (+) True trnal-caa_30