RNA id: unassigned_transcript_1511


Basic Information

Item Value
RNA id unassigned_transcript_1511
length 84
RNA type tRNA
GC content 0.57
exon number 2
gene id trnal-caa_32
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21583344 ~ 21583454 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTCCAAATGGaggcgtgggttcaaatcccactccTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311136 lncRNA upstream 6155 21514850 ~ 21577189 (+) False G229352
TU311134 lncRNA upstream 58628 21514863 ~ 21524716 (+) True G229352
TU311145 lncRNA upstream 60921 21503644 ~ 21522423 (+) False G229352
TU311091 lncRNA upstream 154106 21428303 ~ 21429238 (+) False arid2
TU311019 lncRNA upstream 312233 21265412 ~ 21271111 (+) True G229264
TU311175 lncRNA downstream 36519 21619973 ~ 21620222 (+) True G229381
TU311181 lncRNA downstream 53643 21637097 ~ 21637359 (+) True G229386
TU311190 lncRNA downstream 82744 21666198 ~ 21666434 (+) True G229395
TU311191 lncRNA downstream 84259 21667713 ~ 21667988 (+) True G229396
TU311194 lncRNA downstream 99165 21682619 ~ 21683484 (+) True G229399
XM_039791832.1 mRNA upstream 130818 21433581 ~ 21452526 (+) False scaf11
XM_039791828.1 mRNA upstream 130818 21433582 ~ 21452526 (+) True scaf11
XM_039791831.1 mRNA upstream 130818 21433582 ~ 21452526 (+) False scaf11
XM_039791830.1 mRNA upstream 130818 21433582 ~ 21452526 (+) False scaf11
XM_039791778.1 mRNA upstream 154612 21376872 ~ 21428732 (+) True arid2
XM_039791040.1 mRNA downstream 41048 21624502 ~ 21630444 (+) True LOC120553001
XM_039791170.1 mRNA downstream 174199 21757653 ~ 21766517 (+) True LOC120553089
XM_039791166.1 mRNA downstream 183453 21766907 ~ 21801671 (+) False LOC120553088
XM_039791167.1 mRNA downstream 203762 21787216 ~ 21801671 (+) True LOC120553088
XM_039791169.1 mRNA downstream 204113 21787567 ~ 21801672 (+) False LOC120553088
unassigned_transcript_1510 other upstream 1255 21581979 ~ 21582089 (+) True trnal-caa_31
unassigned_transcript_1509 other upstream 2144 21581090 ~ 21581200 (+) True trnal-caa_30
unassigned_transcript_1508 other upstream 2492 21580742 ~ 21580852 (+) True trnal-caa_29
unassigned_transcript_1507 other upstream 2737 21580497 ~ 21580607 (+) True trnal-caa_28
unassigned_transcript_1506 other upstream 2982 21580252 ~ 21580362 (+) True trnal-caa_27
unassigned_transcript_1512 other downstream 135 21583589 ~ 21583699 (+) True trnal-caa_33
unassigned_transcript_1513 other downstream 1014 21584468 ~ 21584578 (+) True trnal-caa_34
unassigned_transcript_1514 other downstream 1360 21584814 ~ 21584924 (+) True trnal-caa_35
unassigned_transcript_1515 other downstream 2046 21585500 ~ 21585610 (+) True trnal-caa_36
unassigned_transcript_1516 other downstream 4312 21587766 ~ 21587874 (+) True trnal-caa_37