RNA id: unassigned_transcript_1523


Basic Information

Item Value
RNA id unassigned_transcript_1523
length 84
RNA type tRNA
GC content 0.55
exon number 2
gene id trnal-caa_44
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21593774 ~ 21593884 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTCCAAATGGaggcgtgggttcaaatccTACTCCTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311136 lncRNA upstream 16585 21514850 ~ 21577189 (+) False G229352
TU311134 lncRNA upstream 69058 21514863 ~ 21524716 (+) True G229352
TU311145 lncRNA upstream 71351 21503644 ~ 21522423 (+) False G229352
TU311091 lncRNA upstream 164536 21428303 ~ 21429238 (+) False arid2
TU311019 lncRNA upstream 322663 21265412 ~ 21271111 (+) True G229264
TU311175 lncRNA downstream 26089 21619973 ~ 21620222 (+) True G229381
TU311181 lncRNA downstream 43213 21637097 ~ 21637359 (+) True G229386
TU311190 lncRNA downstream 72314 21666198 ~ 21666434 (+) True G229395
TU311191 lncRNA downstream 73829 21667713 ~ 21667988 (+) True G229396
TU311194 lncRNA downstream 88735 21682619 ~ 21683484 (+) True G229399
XM_039791832.1 mRNA upstream 141248 21433581 ~ 21452526 (+) False scaf11
XM_039791828.1 mRNA upstream 141248 21433582 ~ 21452526 (+) True scaf11
XM_039791831.1 mRNA upstream 141248 21433582 ~ 21452526 (+) False scaf11
XM_039791830.1 mRNA upstream 141248 21433582 ~ 21452526 (+) False scaf11
XM_039791778.1 mRNA upstream 165042 21376872 ~ 21428732 (+) True arid2
XM_039791040.1 mRNA downstream 30618 21624502 ~ 21630444 (+) True LOC120553001
XM_039791170.1 mRNA downstream 163769 21757653 ~ 21766517 (+) True LOC120553089
XM_039791166.1 mRNA downstream 173023 21766907 ~ 21801671 (+) False LOC120553088
XM_039791167.1 mRNA downstream 193332 21787216 ~ 21801671 (+) True LOC120553088
XM_039791169.1 mRNA downstream 193683 21787567 ~ 21801672 (+) False LOC120553088
unassigned_transcript_1522 other upstream 236 21593428 ~ 21593538 (+) True trnal-caa_43
unassigned_transcript_1521 other upstream 582 21593082 ~ 21593192 (+) True trnal-caa_42
unassigned_transcript_1520 other upstream 929 21592735 ~ 21592845 (+) True trnal-caa_41
unassigned_transcript_1519 other upstream 3941 21589723 ~ 21589833 (+) True trnal-caa_40
unassigned_transcript_1518 other upstream 4482 21589181 ~ 21589292 (+) True trnal-caa_39
unassigned_transcript_1524 other downstream 430 21594314 ~ 21594424 (+) True trnal-caa_45
unassigned_transcript_1525 other downstream 2142 21596026 ~ 21596136 (+) True trnal-caa_46
unassigned_transcript_1526 other downstream 2884 21596768 ~ 21596878 (+) True trnal-caa_47
TU311226 other downstream 244038 21837922 ~ 21847020 (+) True G229423
TU311228 other downstream 255327 21849211 ~ 21850601 (+) True G229425