RNA id: TU313786


Basic Information

Item Value
RNA id TU313786
length 413
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G231424
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 1625647 ~ 1626680 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacacacacacacacacacagacacacacacacacagacacacacacacagacagacacacacacagacacacacacacacacagacacacacacagacacacacacacagacacacacacacacacacacacacacacacacacacacagagagacacactctTTTCATGCCAGAATCCCAGAATCAAATCCAGAGTTTCTATCAAAGCTACAAAGGGACTTTTTCAGAGTTTGCGTTGAGCCCAAAGTGACTCCAGAAAGCCGAGCAGCCATGCAGAGAGCTGGTGGTGACGGGGAATCCCCTGGACCATTCCTGGGGTGTACACACAGCAAGAGAGATACAAATCTTGTGAGCGGTGACGTAGCGCTCATTAAAATGCCCTTTGTGGCTTCCAGTGTCGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313787 lncRNA upstream 36875 1583984 ~ 1588772 (+) True G231425
TU313830 lncRNA upstream 72673 1552269 ~ 1552974 (+) True G231454
TU313814 lncRNA upstream 104708 1468168 ~ 1520939 (+) True LOC120554068
TU313809 lncRNA upstream 107517 1459882 ~ 1518130 (+) True G231437
TU313791 lncRNA upstream 113626 1468916 ~ 1512021 (+) True G231427
TU313836 lncRNA downstream 6526 1633206 ~ 1682955 (+) True G231458
TU313837 lncRNA downstream 8804 1635484 ~ 1682955 (+) False G231458
TU313839 lncRNA downstream 19512 1646192 ~ 1662958 (+) False G231458
TU313954 lncRNA downstream 38196 1664876 ~ 1776160 (+) True G231474
TU313941 lncRNA downstream 67964 1694644 ~ 1730479 (+) True G231464
XM_039792664.1 mRNA upstream 104583 1503693 ~ 1521064 (+) False LOC120554068
XM_039792663.1 mRNA upstream 142666 1478028 ~ 1482981 (+) True gbx2
XM_039793791.1 mRNA upstream 229070 1383910 ~ 1396577 (+) True LOC120554760
XM_039793792.1 mRNA upstream 229070 1385672 ~ 1396577 (+) False LOC120554760
XM_039793721.1 mRNA upstream 372072 1237578 ~ 1253575 (+) True LOC120554718
XM_039793640.1 mRNA downstream 106901 1733581 ~ 1743392 (+) True LOC120554628
XM_039793804.1 mRNA downstream 122598 1749278 ~ 1781427 (+) True mlpha
XM_039792600.1 mRNA downstream 182465 1809145 ~ 1810702 (+) True LOC120554028
XM_039793630.1 mRNA downstream 201846 1828526 ~ 1839241 (+) True LOC120554615
XM_039792598.1 mRNA downstream 338077 1964757 ~ 2031755 (+) True LOC120554025
TU313797 other upstream 129040 1487274 ~ 1496607 (+) True G231428
TU313705 other upstream 175471 1235697 ~ 1450176 (+) True G231361
TU313737 other upstream 222593 1340246 ~ 1403054 (+) True LOC120554625
TU313676 other upstream 523421 1069687 ~ 1102226 (+) False G231356
TU313866 other downstream 106829 1733509 ~ 1747994 (+) False G231461
TU313931 other downstream 106829 1733509 ~ 1747994 (+) False G231461
TU313847 other downstream 121393 1748073 ~ 1775613 (+) False G231461
TU313924 other downstream 121393 1748073 ~ 1775613 (+) False G231461
TU313857 other downstream 134876 1761556 ~ 1775613 (+) False G231461

Expression Profile