RNA id: TU313830


Basic Information

Item Value
RNA id TU313830
length 329
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G231454
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 1552269 ~ 1552974 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTATGCCAAGAAGACAAGTAGGaaaaactattttgatgatTACCATAGGCCTATGTTTACCCTATCTCAAGAGCCAATCAATATCCAAAATATTAGCCTTTTAGATTTATAGTCCCATAAAGTAGTTATggtttaagtttaagtttttagcagtgactgtccttcctttgccgtacctgaagttgctgcattctggctgctgtctggagattccttcgtgcacaactcgtattctttcggctGTTTggtaccagatgttgtaacggcggccatgttgtgtatagtttagggtcctcgccaccaccagaccaatcagcattgagcaGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313814 lncRNA upstream 31330 1468168 ~ 1520939 (+) True LOC120554068
TU313809 lncRNA upstream 34139 1459882 ~ 1518130 (+) True G231437
TU313791 lncRNA upstream 40248 1468916 ~ 1512021 (+) True G231427
TU313818 lncRNA upstream 49501 1502376 ~ 1502768 (+) True G231443
TU313816 lncRNA upstream 54206 1497393 ~ 1498063 (+) True G231441
TU313785 lncRNA downstream 2820 1555794 ~ 1679054 (+) False G231423
TU313787 lncRNA downstream 31010 1583984 ~ 1588772 (+) True G231425
TU313838 lncRNA downstream 31554 1584528 ~ 1651818 (+) False G231458
TU313934 lncRNA downstream 55652 1608626 ~ 1760723 (+) True G231462
TU313944 lncRNA downstream 72214 1625188 ~ 1632582 (+) True G231467
XM_039792664.1 mRNA upstream 31205 1503693 ~ 1521064 (+) False LOC120554068
XM_039792663.1 mRNA upstream 69288 1478028 ~ 1482981 (+) True gbx2
XM_039793791.1 mRNA upstream 155692 1383910 ~ 1396577 (+) True LOC120554760
XM_039793792.1 mRNA upstream 155692 1385672 ~ 1396577 (+) False LOC120554760
XM_039793721.1 mRNA upstream 298694 1237578 ~ 1253575 (+) True LOC120554718
XM_039793640.1 mRNA downstream 180607 1733581 ~ 1743392 (+) True LOC120554628
XM_039793804.1 mRNA downstream 196304 1749278 ~ 1781427 (+) True mlpha
XM_039792600.1 mRNA downstream 256171 1809145 ~ 1810702 (+) True LOC120554028
XM_039793630.1 mRNA downstream 275552 1828526 ~ 1839241 (+) True LOC120554615
XM_039792598.1 mRNA downstream 411783 1964757 ~ 2031755 (+) True LOC120554025
TU313797 other upstream 55662 1487274 ~ 1496607 (+) True G231428
TU313705 other upstream 102093 1235697 ~ 1450176 (+) True G231361
TU313737 other upstream 149215 1340246 ~ 1403054 (+) True LOC120554625
TU313676 other upstream 450043 1069687 ~ 1102226 (+) False G231356
TU313783 other downstream 33078 1586052 ~ 1687667 (+) False G231423
TU313866 other downstream 180535 1733509 ~ 1747994 (+) False G231461
TU313931 other downstream 180535 1733509 ~ 1747994 (+) False G231461
TU313847 other downstream 195099 1748073 ~ 1775613 (+) False G231461
TU313924 other downstream 195099 1748073 ~ 1775613 (+) False G231461

Expression Profile