RNA id: TU313839


Basic Information

Item Value
RNA id TU313839
length 410
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id G231458
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 1584528 ~ 1682955 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtctctctgtgtatgtgtgtgtatgttagtctgtctgtgtgtgtgtgtgtctgtctgtgtgtgtgtctgtctgtctgtctgtctgtctgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtgtgtgtgtctgtgtgtgtgtgtgtctgtctgtctgtgtgtgtgtctgtgtgtctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtctgtctgtgtgtgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtcttgtagctgtgtgtgtgtgtgtgtgttgtacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313944 lncRNA upstream 13610 1625188 ~ 1632582 (+) True G231467
TU313786 lncRNA upstream 19512 1625647 ~ 1626680 (+) True G231424
TU313787 lncRNA upstream 57420 1583984 ~ 1588772 (+) True G231425
TU313830 lncRNA upstream 93218 1552269 ~ 1552974 (+) True G231454
TU313814 lncRNA upstream 125253 1468168 ~ 1520939 (+) True LOC120554068
TU313954 lncRNA downstream 1918 1664876 ~ 1776160 (+) True G231474
TU313941 lncRNA downstream 31686 1694644 ~ 1730479 (+) True G231464
TU313910 lncRNA downstream 53453 1716411 ~ 1751750 (+) False G231461
TU313938 lncRNA downstream 53742 1716700 ~ 1772239 (+) True G231463
TU313966 lncRNA downstream 61981 1724939 ~ 1726261 (+) True G231484
XM_039792664.1 mRNA upstream 125128 1503693 ~ 1521064 (+) False LOC120554068
XM_039792663.1 mRNA upstream 163211 1478028 ~ 1482981 (+) True gbx2
XM_039793791.1 mRNA upstream 249615 1383910 ~ 1396577 (+) True LOC120554760
XM_039793792.1 mRNA upstream 249615 1385672 ~ 1396577 (+) False LOC120554760
XM_039793721.1 mRNA upstream 392617 1237578 ~ 1253575 (+) True LOC120554718
XM_039793640.1 mRNA downstream 70623 1733581 ~ 1743392 (+) True LOC120554628
XM_039793804.1 mRNA downstream 86320 1749278 ~ 1781427 (+) True mlpha
XM_039792600.1 mRNA downstream 146187 1809145 ~ 1810702 (+) True LOC120554028
XM_039793630.1 mRNA downstream 165568 1828526 ~ 1839241 (+) True LOC120554615
XM_039792598.1 mRNA downstream 301799 1964757 ~ 2031755 (+) True LOC120554025
TU313797 other upstream 149585 1487274 ~ 1496607 (+) True G231428
TU313705 other upstream 196016 1235697 ~ 1450176 (+) True G231361
TU313737 other upstream 243138 1340246 ~ 1403054 (+) True LOC120554625
TU313676 other upstream 543966 1069687 ~ 1102226 (+) False G231356
TU313866 other downstream 70551 1733509 ~ 1747994 (+) False G231461
TU313931 other downstream 70551 1733509 ~ 1747994 (+) False G231461
TU313847 other downstream 85115 1748073 ~ 1775613 (+) False G231461
TU313924 other downstream 85115 1748073 ~ 1775613 (+) False G231461
TU313857 other downstream 98598 1761556 ~ 1775613 (+) False G231461

Expression Profile