RNA id: TU313910


Basic Information

Item Value
RNA id TU313910
length 418
lncRNA type read_through
GC content 0.51
exon number 2
gene id G231461
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 1716411 ~ 1791858 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagaaacacacacacacacacacacacacacacacacacacacagagtcacagaaacacacagacaggcacacgcacgcacgcacacacacacacacacacacacaatcacagacacacagaaacagacagacaggcacacacacacatgcacgcatgcacacacgcacacacacatacaggcacacacacgcacgcatacacacacacacagacacacaccgaaacacacagacactcatacacacacacacacacacacacacacacacacacacaaacacacatacagacacacagacaggcacacacacacacacacacagacaggcacacacacacacacacacacacacaatcaatgaactcccccccccccctcctcccacacacactATTCTCCATGAAAACCTTGTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313780 lncRNA upstream 3009 1399732 ~ 1713402 (+) True G231423
TU313836 lncRNA upstream 33456 1633206 ~ 1682955 (+) True G231458
TU313837 lncRNA upstream 33456 1635484 ~ 1682955 (+) False G231458
TU313779 lncRNA upstream 34296 1399732 ~ 1682115 (+) False G231423
TU313785 lncRNA upstream 37357 1555794 ~ 1679054 (+) False G231423
TU313935 lncRNA downstream 6621 1758371 ~ 1758704 (+) False G231463
TU313992 lncRNA downstream 99426 1851176 ~ 1851846 (+) True G231494
TU313993 lncRNA downstream 104322 1856072 ~ 1912063 (+) True G231495
TU314003 lncRNA downstream 290716 2042466 ~ 2110774 (+) False G231503
TU314013 lncRNA downstream 317407 2069157 ~ 2070842 (+) True G231512
XM_039792664.1 mRNA upstream 195347 1503693 ~ 1521064 (+) False LOC120554068
XM_039792663.1 mRNA upstream 233430 1478028 ~ 1482981 (+) True gbx2
XM_039793791.1 mRNA upstream 319834 1383910 ~ 1396577 (+) True LOC120554760
XM_039793792.1 mRNA upstream 319834 1385672 ~ 1396577 (+) False LOC120554760
XM_039793721.1 mRNA upstream 462836 1237578 ~ 1253575 (+) True LOC120554718
XM_039792600.1 mRNA downstream 57395 1809145 ~ 1810702 (+) True LOC120554028
XM_039793630.1 mRNA downstream 76776 1828526 ~ 1839241 (+) True LOC120554615
XM_039792598.1 mRNA downstream 213007 1964757 ~ 2031755 (+) True LOC120554025
XM_039792593.1 mRNA downstream 348402 2100152 ~ 2107127 (+) False LOC120554020
XM_039792592.1 mRNA downstream 348402 2100152 ~ 2107127 (+) True LOC120554020
TU313783 other upstream 28744 1586052 ~ 1687667 (+) False G231423
TU313797 other upstream 219804 1487274 ~ 1496607 (+) True G231428
TU313705 other upstream 266235 1235697 ~ 1450176 (+) True G231361
TU313737 other upstream 313357 1340246 ~ 1403054 (+) True LOC120554625
TU313692 other upstream 639627 1069687 ~ 1076784 (+) False G231356
TU313857 other downstream 9806 1761556 ~ 1775613 (+) False G231461
TU313851 other downstream 10118 1761868 ~ 1775613 (+) False G231461
XR_005638581.1 other downstream 343521 2095271 ~ 2095399 (+) True LOC120554798
TU314015 other downstream 345125 2096875 ~ 2098749 (+) True G231514
unassigned_transcript_1550 other downstream 1057762 2809512 ~ 2809584 (+) True trnar-ccu_18

Expression Profile