RNA id: TU313934


Basic Information

Item Value
RNA id TU313934
length 661
lncRNA type read_through
GC content 0.48
exon number 2
gene id G231462
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 1608626 ~ 1760723 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctgtctctctgtctctctttctgtctctgtctgtctctctgtctgtctgtggctctgtctgtctctctctgtctgtctgtttttctctctgtctgtctgtctgtctgtctttatctgtctgtctgtctttatctgtctgtctgtggctctctctgtctgtctctctttctcggtctgtctctctgtctgtctctctgtctgtctgtctctctgtctgtctctctgtcggtctgtccgtgtttctatctctctgtctgtctctctcgttctgtctgtttttctgtctgtctgtcggtctgtctgtctttatctgtttctctctgtctgtggctctgtctgtctgtctctctttctctgtctgtgtctgtctctgtctctctctctctgtctgtgtctgtctctctgtctgtctctctctgtctgtctctcagtctctctgtctgtctctctgtctgtctctcagtctctctgtctctgtctgtctctctgtctgtctgtggctctgtctgtctctctctgtctgtctgtttttctctgtctgtctgtctgtctgtctttatctgtctgtctgtctttatctgtctgtctgtggctctctgtctgtctgtctgtctctgtctgtctctgtctgttctctctctgtctgtctctctcgttctg

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313787 lncRNA upstream 19854 1583984 ~ 1588772 (+) True G231425
TU313830 lncRNA upstream 55652 1552269 ~ 1552974 (+) True G231454
TU313814 lncRNA upstream 87687 1468168 ~ 1520939 (+) True LOC120554068
TU313809 lncRNA upstream 90496 1459882 ~ 1518130 (+) True G231437
TU313791 lncRNA upstream 96605 1468916 ~ 1512021 (+) True G231427
TU313992 lncRNA downstream 90453 1851176 ~ 1851846 (+) True G231494
TU313993 lncRNA downstream 95349 1856072 ~ 1912063 (+) True G231495
TU314003 lncRNA downstream 281743 2042466 ~ 2110774 (+) False G231503
TU314013 lncRNA downstream 308434 2069157 ~ 2070842 (+) True G231512
TU314002 lncRNA downstream 346630 2107353 ~ 2110774 (+) True G231503
XM_039792664.1 mRNA upstream 87562 1503693 ~ 1521064 (+) False LOC120554068
XM_039792663.1 mRNA upstream 125645 1478028 ~ 1482981 (+) True gbx2
XM_039793791.1 mRNA upstream 212049 1383910 ~ 1396577 (+) True LOC120554760
XM_039793792.1 mRNA upstream 212049 1385672 ~ 1396577 (+) False LOC120554760
XM_039793721.1 mRNA upstream 355051 1237578 ~ 1253575 (+) True LOC120554718
XM_039792600.1 mRNA downstream 48422 1809145 ~ 1810702 (+) True LOC120554028
XM_039793630.1 mRNA downstream 67803 1828526 ~ 1839241 (+) True LOC120554615
XM_039792598.1 mRNA downstream 204034 1964757 ~ 2031755 (+) True LOC120554025
XM_039792593.1 mRNA downstream 339429 2100152 ~ 2107127 (+) False LOC120554020
XM_039792592.1 mRNA downstream 339429 2100152 ~ 2107127 (+) True LOC120554020
TU313797 other upstream 112019 1487274 ~ 1496607 (+) True G231428
TU313705 other upstream 158450 1235697 ~ 1450176 (+) True G231361
TU313737 other upstream 205572 1340246 ~ 1403054 (+) True LOC120554625
TU313676 other upstream 506400 1069687 ~ 1102226 (+) False G231356
TU313857 other downstream 833 1761556 ~ 1775613 (+) False G231461
TU313851 other downstream 1145 1761868 ~ 1775613 (+) False G231461
XR_005638581.1 other downstream 334548 2095271 ~ 2095399 (+) True LOC120554798
TU314015 other downstream 336152 2096875 ~ 2098749 (+) True G231514
unassigned_transcript_1550 other downstream 1048789 2809512 ~ 2809584 (+) True trnar-ccu_18

Expression Profile